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Merge branch 'no_pybind_everywhere' into 'master'

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Get rid of pybind11 include in archive.hpp

See merge request jschoeberl/netgen!175
This commit is contained in:
Joachim Schöberl 2019-07-12 06:48:15 +00:00
commit 1653f56efc
9 changed files with 145 additions and 118 deletions
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2
libsrc/core/CMakeLists.txt
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@ -43,7 +43,7 @@ target_link_libraries(ngcore PUBLIC netgen_mpi PRIVATE ${CMAKE_THREAD_LIBS_INIT}
install(FILES ngcore.hpp archive.hpp type_traits.hpp version.hpp ngcore_api.hpp logging.hpp
exception.hpp symboltable.hpp paje_trace.hpp utils.hpp profiler.hpp mpi_wrapper.hpp
array.hpp taskmanager.hpp concurrentqueue.h localheap.hpp
array.hpp taskmanager.hpp concurrentqueue.h localheap.hpp python_ngcore.hpp
DESTINATION ${NG_INSTALL_DIR_INCLUDE}/core COMPONENT netgen_devel)
if(ENABLE_CPP_CORE_GUIDELINES_CHECK)

123
libsrc/core/archive.hpp
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@ -22,7 +22,10 @@
#include "version.hpp" // for VersionInfo
#ifdef NETGEN_PYTHON
#include <pybind11/pybind11.h>
namespace pybind11
{
class object;
}
#endif // NETGEN_PYTHON
namespace ngcore
@ -122,27 +125,12 @@ namespace ngcore
// Python should be archived using this Shallow function. If Shallow is called from C++ code
// it archives the object normally.
template<typename T>
Archive& Shallow(T& val)
{
static_assert(detail::is_any_pointer<T>, "ShallowArchive must be given pointer type!");
#ifdef NETGEN_PYTHON
if(shallow_to_python)
{
if(is_output)
ShallowOutPython(pybind11::cast(val));
else
val = pybind11::cast<T>(ShallowInPython());
}
else
#endif // NETGEN_PYTHON
*this & val;
return *this;
}
Archive& Shallow(T& val); // implemented in python_ngcore.hpp
#ifdef NETGEN_PYTHON
virtual void ShallowOutPython(const pybind11::object& /*unused*/)
{ throw UnreachableCodeException{}; }
virtual pybind11::object ShallowInPython()
virtual void ShallowInPython(pybind11::object &)
{ throw UnreachableCodeException{}; }
#endif // NETGEN_PYTHON
@ -909,105 +897,6 @@ namespace ngcore
}
};
#ifdef NETGEN_PYTHON
template<typename ARCHIVE>
class PyArchive : public ARCHIVE
{
private:
pybind11::list lst;
size_t index = 0;
std::map<std::string, VersionInfo> version_needed;
protected:
using ARCHIVE::stream;
using ARCHIVE::version_map;
using ARCHIVE::logger;
using ARCHIVE::GetLibraryVersions;
public:
PyArchive(const pybind11::object& alst = pybind11::none()) :
ARCHIVE(std::make_shared<std::stringstream>()),
lst(alst.is_none() ? pybind11::list() : pybind11::cast<pybind11::list>(alst))
{
ARCHIVE::shallow_to_python = true;
if(Input())
{
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-1]));
*this & version_needed;
logger->debug("versions needed for unpickling = {}", version_needed);
for(auto& libversion : version_needed)
if(libversion.second > GetLibraryVersion(libversion.first))
throw Exception("Error in unpickling data:\nLibrary " + libversion.first +
" must be at least " + libversion.second.to_string());
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-2]));
*this & version_map;
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-3]));
}
}
void NeedsVersion(const std::string& library, const std::string& version) override
{
if(Output())
{
logger->debug("Need version {} of library {}.", version, library);
version_needed[library] = version_needed[library] > version ? version_needed[library] : version;
}
}
using ARCHIVE::Output;
using ARCHIVE::Input;
using ARCHIVE::FlushBuffer;
using ARCHIVE::operator&;
using ARCHIVE::operator<<;
using ARCHIVE::GetVersion;
void ShallowOutPython(const pybind11::object& val) override { lst.append(val); }
pybind11::object ShallowInPython() override { return lst[index++]; }
pybind11::list WriteOut()
{
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
stream = std::make_shared<std::stringstream>();
*this & GetLibraryVersions();
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
stream = std::make_shared<std::stringstream>();
logger->debug("Writeout version needed = {}", version_needed);
*this & version_needed;
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
return lst;
}
};
template<typename T, typename T_ARCHIVE_OUT=BinaryOutArchive, typename T_ARCHIVE_IN=BinaryInArchive>
auto NGSPickle()
{
return pybind11::pickle([](T* self)
{
PyArchive<T_ARCHIVE_OUT> ar;
ar & self;
auto output = pybind11::make_tuple(ar.WriteOut());
GetLogger("Archive")->trace("Pickling output for object of type {} = {}",
Demangle(typeid(T).name()),
std::string(pybind11::str(output)));
return output;
},
[](const pybind11::tuple & state)
{
T* val = nullptr;
GetLogger("Archive")->trace("State for unpickling of object of type {} = {}",
Demangle(typeid(T).name()),
std::string(pybind11::str(state[0])));
PyArchive<T_ARCHIVE_IN> ar(state[0]);
ar & val;
return val;
});
}
#endif // NETGEN_PYTHON
} // namespace ngcore
#endif // NETGEN_CORE_ARCHIVE_HPP

132
libsrc/core/python_ngcore.hpp Normal file
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@ -0,0 +1,132 @@
#ifndef NETGEN_CORE_PYTHON_NGCORE_HPP
#define NETGEN_CORE_PYTHON_NGCORE_HPP
#include <pybind11/pybind11.h>
#include "archive.hpp"
namespace ngcore
{
template<typename T>
Archive& Archive :: Shallow(T& val)
{
static_assert(detail::is_any_pointer<T>, "ShallowArchive must be given pointer type!");
#ifdef NETGEN_PYTHON
if(shallow_to_python)
{
if(is_output)
ShallowOutPython(pybind11::cast(val));
else
{
pybind11::object obj;
ShallowInPython(obj);
val = pybind11::cast<T>(obj);
}
}
else
#endif // NETGEN_PYTHON
*this & val;
return *this;
}
template<typename ARCHIVE>
class PyArchive : public ARCHIVE
{
private:
pybind11::list lst;
size_t index = 0;
std::map<std::string, VersionInfo> version_needed;
protected:
using ARCHIVE::stream;
using ARCHIVE::version_map;
using ARCHIVE::logger;
using ARCHIVE::GetLibraryVersions;
public:
PyArchive(const pybind11::object& alst = pybind11::none()) :
ARCHIVE(std::make_shared<std::stringstream>()),
lst(alst.is_none() ? pybind11::list() : pybind11::cast<pybind11::list>(alst))
{
ARCHIVE::shallow_to_python = true;
if(Input())
{
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-1]));
*this & version_needed;
logger->debug("versions needed for unpickling = {}", version_needed);
for(auto& libversion : version_needed)
if(libversion.second > GetLibraryVersion(libversion.first))
throw Exception("Error in unpickling data:\nLibrary " + libversion.first +
" must be at least " + libversion.second.to_string());
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-2]));
*this & version_map;
stream = std::make_shared<std::stringstream>
(pybind11::cast<pybind11::bytes>(lst[pybind11::len(lst)-3]));
}
}
void NeedsVersion(const std::string& library, const std::string& version) override
{
if(Output())
{
logger->debug("Need version {} of library {}.", version, library);
version_needed[library] = version_needed[library] > version ? version_needed[library] : version;
}
}
using ARCHIVE::Output;
using ARCHIVE::Input;
using ARCHIVE::FlushBuffer;
using ARCHIVE::operator&;
using ARCHIVE::operator<<;
using ARCHIVE::GetVersion;
void ShallowOutPython(const pybind11::object& val) override { lst.append(val); }
void ShallowInPython(pybind11::object& val) override { val = lst[index++]; }
pybind11::list WriteOut()
{
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
stream = std::make_shared<std::stringstream>();
*this & GetLibraryVersions();
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
stream = std::make_shared<std::stringstream>();
logger->debug("Writeout version needed = {}", version_needed);
*this & version_needed;
FlushBuffer();
lst.append(pybind11::bytes(std::static_pointer_cast<std::stringstream>(stream)->str()));
return lst;
}
};
template<typename T, typename T_ARCHIVE_OUT=BinaryOutArchive, typename T_ARCHIVE_IN=BinaryInArchive>
auto NGSPickle()
{
return pybind11::pickle([](T* self)
{
PyArchive<T_ARCHIVE_OUT> ar;
ar & self;
auto output = pybind11::make_tuple(ar.WriteOut());
GetLogger("Archive")->trace("Pickling output for object of type {} = {}",
Demangle(typeid(T).name()),
std::string(pybind11::str(output)));
return output;
},
[](const pybind11::tuple & state)
{
T* val = nullptr;
GetLogger("Archive")->trace("State for unpickling of object of type {} = {}",
Demangle(typeid(T).name()),
std::string(pybind11::str(state[0])));
PyArchive<T_ARCHIVE_IN> ar(state[0]);
ar & val;
return val;
});
}
} // namespace ngcore
#endif // NETGEN_CORE_PYTHON_NGCORE_HPP

1
libsrc/csg/python_csg.cpp
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@ -1,6 +1,7 @@
#ifdef NG_PYTHON
#include <../general/ngpython.hpp>
#include <core/python_ngcore.hpp>
#include <csg.hpp>

1
libsrc/geom2d/python_geom2d.cpp
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@ -1,6 +1,7 @@
#ifdef NG_PYTHON
#include <../general/ngpython.hpp>
#include <core/python_ngcore.hpp>
#include <meshing.hpp>
#include <geometry2d.hpp>

1
libsrc/meshing/meshclass.cpp
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@ -1,6 +1,7 @@
#include <mystdlib.h>
#include <atomic>
#include "meshing.hpp"
#include <core/python_ngcore.hpp>
namespace netgen
{

1
libsrc/meshing/python_mesh.cpp
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@ -1,6 +1,7 @@
#ifdef NG_PYTHON
#include <../general/ngpython.hpp>
#include <core/python_ngcore.hpp>
#include <mystdlib.h>
#include "meshing.hpp"

1
libsrc/occ/python_occ.cpp
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@ -2,6 +2,7 @@
#ifdef OCCGEOMETRY
#include <../general/ngpython.hpp>
#include <core/python_ngcore.hpp>
#include <meshing.hpp>
#include <occgeom.hpp>

1
libsrc/stlgeom/python_stl.cpp
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@ -2,6 +2,7 @@
#ifdef NG_PYTHON
#include <../general/ngpython.hpp>
#include <core/python_ngcore.hpp>
#include <stlgeom.hpp>
#ifdef WIN32