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global enumeration of points for pickling (as an option)

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Joachim Schöberl 2020-08-19 19:28:34 +02:00
parent 5e09626466
commit 2c6e0e2bec
2 changed files with 96 additions and 1 deletions
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96
libsrc/meshing/meshclass.cpp
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@ -1289,13 +1289,107 @@ namespace netgen
if (comm.Rank() == 0)
archive & dimension;
// merge points
auto rank = comm.Rank();
auto & partop = GetParallelTopology();
// global enumration of points:
// not used now, but will be needed for refined meshes
// GridFunciton pickling is not compatible, now
// should go to paralleltopology
Array<PointIndex, PointIndex> global_pnums(points.Size());
global_pnums = -1;
int num_master_points = 0;
for (PointIndex pi : Range(points))
{
auto distprocs = partop.GetDistantPNums(pi-PointIndex::BASE);
// check sorted:
for (int j = 0; j+1 < distprocs.Size(); j++)
if (distprocs[j+1] < distprocs[j]) cout << "wrong sort" << endl;
if (distprocs.Size() == 0 || distprocs[0] > comm.Rank())
global_pnums[pi] = PointIndex::BASE+num_master_points++;
}
Array<int> first_master_point(comm.Size());
GetCommunicator().AllGather (num_master_points, first_master_point);
size_t num_glob_points = 0;
for (int i = 0; i < comm.Size(); i++)
{
int cur = first_master_point[i];
first_master_point[i] = num_glob_points;
num_glob_points += cur;
}
for (PointIndex pi : Range(points))
if (global_pnums[pi] != -1)
global_pnums[pi] += first_master_point[comm.Rank()];
// ScatterDofData (global_nums);
Array<int> nsend(comm.Size()), nrecv(comm.Size());
nsend = 0;
nrecv = 0;
/** Count send/recv size **/
for (PointIndex pi : Range(points))
{
auto dps = partop.GetDistantPNums(pi-PointIndex::BASE);
if (!dps.Size()) continue;
if (rank < dps[0])
for(auto p:dps)
nsend[p]++;
else
nrecv[dps[0]]++;
}
Table<PointIndex> send_data(nsend);
Table<PointIndex> recv_data(nrecv);
/** Fill send_data **/
nsend = 0;
for (PointIndex pi : Range(points))
{
auto dps = partop.GetDistantPNums(pi-PointIndex::BASE);
if (dps.Size() && rank < dps[0])
for(auto p : dps)
send_data[p][nsend[p]++] = global_pnums[pi];
}
Array<MPI_Request> requests;
for (int i = 0; i < comm.Size(); i++)
{
if (nsend[i])
requests.Append (comm.ISend (send_data[i], i, 200));
if (nrecv[i])
requests.Append (comm.IRecv (recv_data[i], i, 200));
}
MyMPI_WaitAll (requests);
Array<int> cnt(comm.Size());
cnt = 0;
for (PointIndex pi : Range(points))
{
auto distprocs = partop.GetDistantPNums(pi-PointIndex::BASE);
if (distprocs.Size() > 0 && distprocs[0] < comm.Rank())
{
int master = comm.Size();
for (int j = 0; j < distprocs.Size(); j++)
master = min (master, distprocs[j]);
global_pnums[pi] = recv_data[master][cnt[master]++];
}
}
// merge points
Array<int, PointIndex> globnum(points.Size());
int maxglob = 0;
for (auto pi : Range(points))
{
globnum[pi] = partop.GetGlobalPNum(pi);
// globnum[pi] = global_pnums[pi];
maxglob = max(globnum[pi], maxglob);
}

1
libsrc/meshing/meshtype.hpp
View File

@ -177,6 +177,7 @@ namespace netgen
PointIndex operator-- (int) { PointIndex hi(*this); i--; return hi; }
PointIndex & operator++ () { i++; return *this; }
PointIndex operator-- () { i--; return *this; }
PointIndex operator+= (int add) { i += add; return *this; }
void Invalidate() { i = PointIndex::BASE-1; }
bool IsValid() const { return i != PointIndex::BASE-1; }
#ifdef BASE0