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array numpy buffer protocol
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d6ebe15c17
commit
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@ -7,7 +7,7 @@ using std::string;
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namespace ngcore
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{
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bool ngcore_have_numpy = false;
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void SetFlag(Flags &flags, string s, py::object value)
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{
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if (py::isinstance<py::dict>(value))
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@ -4,6 +4,7 @@
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#include "ngcore_api.hpp" // for operator new
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#include <pybind11/pybind11.h>
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#include <pybind11/operators.h>
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#include <pybind11/numpy.h>
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#include "array.hpp"
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#include "archive.hpp"
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@ -13,6 +14,7 @@ namespace py = pybind11;
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namespace ngcore
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{
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NGCORE_API extern bool ngcore_have_numpy;
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template<typename T>
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Array<T> makeCArray(const py::object& obj)
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@ -29,6 +31,20 @@ namespace ngcore
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return arr;
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}
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namespace detail
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{
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template<typename T>
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struct HasPyFormat
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{
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private:
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template<typename T2>
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static auto check(T2*) -> std::enable_if_t<std::is_same_v<decltype(std::declval<py::format_descriptor<T2>>().format()), std::string>, std::true_type>;
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static auto check(...) -> std::false_type;
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public:
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static constexpr bool value = decltype(check((T*) nullptr))::value;
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};
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} // namespace detail
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template <typename T, typename TIND=typename FlatArray<T>::index_type>
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void ExportArray (py::module &m)
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{
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@ -36,7 +52,8 @@ namespace ngcore
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using TArray = Array<T, TIND>;
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std::string suffix = std::string(typeid(T).name()) + "_" + typeid(TIND).name();
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std::string fname = std::string("FlatArray_") + suffix;
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py::class_<TFlat>(m, fname.c_str())
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auto flatarray_class = py::class_<TFlat>(m, fname.c_str(),
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py::buffer_protocol())
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.def ("__len__", [] ( TFlat &self ) { return self.Size(); } )
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.def ("__getitem__",
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[](TFlat & self, TIND i) -> T&
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@ -77,6 +94,30 @@ namespace ngcore
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;
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if constexpr (detail::HasPyFormat<T>::value)
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{
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if(ngcore_have_numpy && !py::detail::npy_format_descriptor<T>::dtype().is_none())
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{
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flatarray_class
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.def_buffer([](TFlat& self)
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{
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return py::buffer_info(
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self.Addr(0),
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sizeof(T),
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py::format_descriptor<T>::format(),
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1,
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{ self.Size() },
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{ sizeof(T) * (self.Addr(1) - self.Addr(0)) });
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})
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.def("NumPy", [](py::object self)
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{
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return py::module::import("numpy")
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.attr("frombuffer")(self, py::detail::npy_format_descriptor<T>::dtype());
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})
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;
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}
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}
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std::string aname = std::string("Array_") + suffix;
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py::class_<TArray, TFlat>(m, aname.c_str())
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.def(py::init([] (size_t n) { return new TArray(n); }),py::arg("n"), "Makes array of given length")
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@ -2,13 +2,18 @@
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#include "bitarray.hpp"
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#include "taskmanager.hpp"
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using namespace ngcore;
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using namespace std;
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using namespace pybind11::literals;
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PYBIND11_MODULE(pyngcore, m) // NOLINT
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{
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try
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{
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auto numpy = py::module::import("numpy");
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ngcore_have_numpy = !numpy.is_none();
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}
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catch(...) {}
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ExportArray<int>(m);
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ExportArray<unsigned>(m);
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ExportArray<size_t>(m);
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17
tests/pytest/test_array.py
Normal file
17
tests/pytest/test_array.py
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@ -0,0 +1,17 @@
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from pyngcore import *
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from numpy import sort, array
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def test_array_numpy():
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a = Array_i_m(5)
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a[:] = 0
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a[3:] = 2
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assert(sum(a) == 4)
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a[1] = 5
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b = sort(a)
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assert(all(b == array([0,0,2,2,5])))
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assert(all(a == array([0,5,0,2,2])))
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a.NumPy().sort()
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assert(all(a == array([0,0,2,2,5])))
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if __name__ == "__main__":
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test_array_numpy()
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