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Merge branch 'fix_occ_boundarylayer' into 'master'

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fix GenerateBoundaryLayer for new OCC meshes with single segments (not one...

See merge request jschoeberl/netgen!478
This commit is contained in:
Matthias Hochsteger 2022-02-24 18:40:44 +00:00
commit 8c2a056b52
2 changed files with 149 additions and 31 deletions
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160
libsrc/meshing/boundarylayer.cpp
View File

@ -91,6 +91,94 @@ namespace netgen
cout << "Quads: " << nq << endl;
}
// depending on the geometry type, the mesh contains segments multiple times (once for each face)
bool HaveSingleSegments( const Mesh & mesh )
{
auto& topo = mesh.GetTopology();
NgArray<SurfaceElementIndex> surf_els;
for(auto segi : Range(mesh.LineSegments()))
{
mesh.GetTopology().GetSegmentSurfaceElements(segi+1, surf_els);
if(surf_els.Size()<2)
continue;
auto seg = mesh[segi];
auto pi0 = min(seg[0], seg[1]);
auto pi1 = max(seg[0], seg[1]);
auto p0_segs = topo.GetVertexSegments(seg[0]);
for(auto segi_other : p0_segs)
{
if(segi_other == segi)
continue;
auto seg_other = mesh[segi_other];
auto pi0_other = min(seg_other[0], seg_other[1]);
auto pi1_other = max(seg_other[0], seg_other[1]);
if( pi0_other == pi0 && pi1_other == pi1 )
return false;
}
// found segment with multiple adjacent surface elements but no other segments with same points -> have single segments
return true;
}
return true;
}
// duplicates segments (and sets seg.si accordingly) to have a unified data structure for all geometry types
Array<Segment> BuildSegments( Mesh & mesh )
{
Array<Segment> segments;
auto& topo = mesh.GetTopology();
NgArray<SurfaceElementIndex> surf_els;
for(auto segi : Range(mesh.LineSegments()))
{
auto seg = mesh[segi];
mesh.GetTopology().GetSegmentSurfaceElements(segi+1, surf_els);
for(auto seli : surf_els)
{
const auto & sel = mesh[seli];
seg.si = sel.GetIndex();
auto np = sel.GetNP();
for(auto i : Range(np))
{
if(sel[i] == seg[0])
{
if(sel[(i+1)%np] != seg[1])
swap(seg[0], seg[1]);
break;
}
}
seg.edgenr = topo.GetEdge(segi)+1;
segments.Append(seg);
}
}
return segments;
}
void MergeAndAddSegments( Mesh & mesh, FlatArray<Segment> new_segments)
{
INDEX_2_HASHTABLE<bool> already_added( 2*new_segments.Size() );
for(auto & seg : new_segments)
{
INDEX_2 i2 (seg[0], seg[1]);
i2.Sort();
if(!already_added.Used(i2))
{
mesh.AddSegment(seg);
already_added.Set(i2, true);
}
}
}
void GenerateBoundaryLayer(Mesh& mesh, const BoundaryLayerParameters& blp)
{
static Timer timer("Create Boundarylayers");
@ -109,12 +197,20 @@ namespace netgen
domains.Invert();
mesh.UpdateTopology();
bool have_single_segments = HaveSingleSegments(mesh);
Array<Segment> segments;
if(have_single_segments)
segments = BuildSegments(mesh);
else
segments = mesh.LineSegments();
auto& meshtopo = mesh.GetTopology();
int np = mesh.GetNP();
int ne = mesh.GetNE();
int nse = mesh.GetNSE();
int nseg = mesh.GetNSeg();
int nseg = segments.Size();
Array<Array<PointIndex>, PointIndex> mapto(np);
@ -178,7 +274,7 @@ namespace netgen
}
// Bit array to keep track of segments already processed
BitArray segs_done(nseg);
BitArray segs_done(nseg+1);
segs_done.Clear();
// map for all segments with same points
@ -188,10 +284,11 @@ namespace netgen
// 1 == adjacent surface doesn't grow layer, but layer ends on it
// 2 == adjacent surface is interior surface that ends on layer
// 3 == adjacent surface is exterior surface that ends on layer (not allowed yet)
Array<Array<pair<SegmentIndex, int>>, SegmentIndex> segmap(mesh.GetNSeg());
Array<Array<pair<SegmentIndex, int>>, SegmentIndex> segmap(segments.Size());
// moved segments
Array<SegmentIndex> moved_segs;
Array<Segment> new_segments;
// boundaries to project endings to
BitArray project_boundaries(fd_old+1);
@ -199,30 +296,18 @@ namespace netgen
project_boundaries.Clear();
move_boundaries.Clear();
Array<SurfaceElementIndex, SegmentIndex> seg2surfel(mesh.GetNSeg());
for(auto si : Range(mesh.SurfaceElements()))
{
NgArray<int> surfeledges;
meshtopo.GetSurfaceElementEdges(si+1, surfeledges);
for(auto edgenr : surfeledges)
for(auto sei : Range(mesh.LineSegments()))
if(meshtopo.GetEdge(sei)+1 == edgenr &&
mesh[sei].si == mesh[si].GetIndex())
seg2surfel[sei] = si;
}
for(auto si : Range(mesh.LineSegments()))
for(auto si : Range(segments))
{
if(segs_done[si]) continue;
const auto& segi = mesh[si];
const auto& segi = segments[si];
if(si_map[segi.si] == -1) continue;
segs_done.SetBit(si);
segmap[si].Append(make_pair(si, 0));
moved_segs.Append(si);
for(auto sj : Range(mesh.LineSegments()))
for(auto sj : Range(segments))
{
if(segs_done.Test(sj)) continue;
const auto& segj = mesh[sj];
const auto& segj = segments[sj];
if((segi[0] == segj[0] && segi[1] == segj[1]) ||
(segi[0] == segj[1] && segi[1] == segj[0]))
{
@ -291,10 +376,10 @@ namespace netgen
}
else
{
for(const auto& seg : mesh.LineSegments())
for(const auto& seg : segments)
{
int count = 0;
for(const auto& seg2 : mesh.LineSegments())
for(const auto& seg2 : segments)
if(((seg[0] == seg2[0] && seg[1] == seg2[1]) || (seg[0] == seg2[1] && seg[1] == seg2[0])) && blp.surfid.Contains(seg2.si))
count++;
if(count == 1)
@ -325,10 +410,10 @@ namespace netgen
{
// copy here since we will add segments and this would
// invalidate a reference!
auto segi = mesh[sei];
auto segi = segments[sei];
for(auto [sej, type] : segmap[sei])
{
auto segj = mesh[sej];
auto segj = segments[sej];
if(type == 0)
{
Segment s;
@ -340,7 +425,7 @@ namespace netgen
seg2edge[pair] = ++max_edge_nr;
s.edgenr = seg2edge[pair];
s.si = si_map[segj.si];
mesh.AddSegment(s);
new_segments.Append(s);
}
// here we need to grow the quad elements
else if(type == 1)
@ -361,7 +446,7 @@ namespace netgen
s0[2] = PointIndex::INVALID;
s0.edgenr = segj.edgenr;
s0.si = segj.si;
mesh.AddSegment(s0);
new_segments.Append(s0);
for(auto i : Range(blp.heights))
{
@ -372,6 +457,11 @@ namespace netgen
sel[1] = p2;
sel[2] = p3;
sel[3] = p4;
for(auto i : Range(4))
{
sel.GeomInfo()[i].u = 0.0;
sel.GeomInfo()[i].v = 0.0;
}
sel.SetIndex(segj.si);
mesh.AddSurfaceElement(sel);
@ -385,7 +475,7 @@ namespace netgen
seg2edge[pair] = ++max_edge_nr;
s1.edgenr = seg2edge[pair];
s1.si = segj.si;
mesh.AddSegment(s1);
new_segments.Append(s1);
Segment s2;
s2[0] = p4;
s2[1] = p1;
@ -395,7 +485,7 @@ namespace netgen
seg2edge[pair] = ++max_edge_nr;
s2.edgenr = seg2edge[pair];
s2.si = segj.si;
mesh.AddSegment(s2);
new_segments.Append(s2);
p1 = p4;
p2 = p3;
}
@ -408,7 +498,7 @@ namespace netgen
seg2edge[pair] = ++max_edge_nr;
s3.edgenr = seg2edge[pair];
s3.si = segj.si;
mesh.AddSegment(s3);
new_segments.Append(s3);
}
}
}
@ -473,7 +563,7 @@ namespace netgen
for(SegmentIndex sei = 0; sei < nseg; sei++)
{
auto& seg = mesh[sei];
auto& seg = segments[sei];
if(move_boundaries.Test(seg.si))
for(auto& p : seg.PNums())
if(mapto[p].Size())
@ -627,6 +717,13 @@ namespace netgen
else
mesh.GetFaceDescriptor(i).SetDomainIn(new_mat_nr);
}
if(have_single_segments)
MergeAndAddSegments(mesh, new_segments);
else
{
for(auto & seg : new_segments)
mesh.AddSegment(seg);
}
mesh.GetTopology().ClearEdges();
mesh.UpdateTopology();
}
@ -1279,6 +1376,11 @@ namespace netgen
// Swap(newel[2], newel[3]);
// }
for(auto i : Range(4))
{
newel.GeomInfo()[i].u = 0.0;
newel.GeomInfo()[i].v = 0.0;
}
mesh.AddSurfaceElement(newel);
}

20
tests/pytest/test_boundarylayer.py
View File

@ -2,6 +2,21 @@
import pytest
from netgen.csg import *
geometries=[unit_cube]
try:
import netgen.occ as occ
box = occ.Box( (0,0,0), (1,1,1) )
box.faces.Min(occ.Y).name = "back"
box.faces.Max(occ.Y).name = "front"
box.faces.Min(occ.X).name = "left"
box.faces.Max(occ.X).name = "right"
box.faces.Min(occ.Z).name = "bottom"
box.faces.Max(occ.Z).name = "top"
geometries.append(occ.OCCGeometry(box))
except ImportError:
pass
def GetNSurfaceElements(mesh, boundaries, adjacent_domain=None):
nse_in_layer = 0
for el in mesh.Elements2D():
@ -14,8 +29,9 @@ def GetNSurfaceElements(mesh, boundaries, adjacent_domain=None):
return nse_in_layer
@pytest.mark.parametrize("outside", [True, False])
def test_boundarylayer(outside, capfd):
mesh = unit_cube.GenerateMesh(maxh=0.3)
@pytest.mark.parametrize("geo", geometries)
def test_boundarylayer(outside, geo, capfd):
mesh = geo.GenerateMesh(maxh=0.3)
ne_before = mesh.ne
layer_surfacenames = ["right", "top", "left", "back", "bottom"]
mesh.BoundaryLayer("|".join(layer_surfacenames), [0.01, 0.01], "layer", outside=outside)