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https://github.com/NGSolve/netgen.git
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Mesh 3d domains in parallel
To get consistent results, copy the LocalH tree in BlockFillLocalH
This commit is contained in:
Matthias Hochsteger
parent
5e3505b897
commit
97623db219
@ -91,6 +91,45 @@ namespace netgen
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delete root;
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}
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unique_ptr<LocalH> LocalH :: Copy ()
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{
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static Timer t("LocalH::Copy"); RegionTimer rt(t);
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auto lh = make_unique<LocalH>(boundingbox, grading, dimension);
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std::map<GradingBox*, GradingBox*> mapping;
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lh->boxes.SetSize(boxes.Size());
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for(auto i : boxes.Range())
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{
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lh->boxes[i] = new GradingBox();
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auto & bnew = *lh->boxes[i];
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auto & b = *boxes[i];
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bnew.xmid[0] = b.xmid[0];
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bnew.xmid[1] = b.xmid[1];
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bnew.xmid[2] = b.xmid[2];
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bnew.h2 = b.h2;
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bnew.hopt = b.hopt;
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bnew.flags = b.flags;
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mapping[&b] = &bnew;
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}
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for(auto i : boxes.Range())
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{
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auto & bnew = *lh->boxes[i];
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auto & b = *boxes[i];
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for(auto k : Range(8))
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{
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if(b.childs[k])
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bnew.childs[k] = mapping[b.childs[k]];
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}
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if(b.father)
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bnew.father = mapping[b.father];
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}
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lh->root = mapping[root];
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return lh;
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}
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void LocalH :: Delete ()
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{
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root->DeleteChilds();
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@ -98,6 +98,8 @@ namespace netgen
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~LocalH();
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///
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unique_ptr<LocalH> Copy();
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///
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void Delete();
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///
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void DoArchive(Archive& ar);
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@ -10,80 +10,29 @@ namespace netgen
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extern const char * pyramidrules2[];
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extern const char * hexrules[];
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// extern double teterrpow;
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MESHING3_RESULT MeshVolume (const MeshingParameters & c_mp, Mesh& mesh3d)
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void MeshDomain(Mesh & mesh3d, const MeshingParameters & c_mp, int k)
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{
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static Timer t("MeshVolume"); RegionTimer reg(t);
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MeshingParameters mp = c_mp; // copy mp to change them here
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int oldne;
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int meshed;
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NgArray<INDEX_2> connectednodes;
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if (!mesh3d.HasLocalHFunction()) mesh3d.CalcLocalH(mp.grading);
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mesh3d.Compress();
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// mesh3d.PrintMemInfo (cout);
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if (mp.checkoverlappingboundary)
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if (mesh3d.CheckOverlappingBoundary())
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throw NgException ("Stop meshing since boundary mesh is overlapping");
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int nonconsist = 0;
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for (int k = 1; k <= mesh3d.GetNDomains(); k++)
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{
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int oldne;
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int meshed;
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if(mp.only3D_domain_nr && mp.only3D_domain_nr !=k)
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continue;
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PrintMessage (3, "Check subdomain ", k, " / ", mesh3d.GetNDomains());
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mesh3d.FindOpenElements(k);
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/*
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bool res = mesh3d.CheckOverlappingBoundary();
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if (res)
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{
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PrintError ("Surface is overlapping !!");
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nonconsist = 1;
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}
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*/
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bool res = (mesh3d.CheckConsistentBoundary() != 0);
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if (res)
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{
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PrintError ("Surface mesh not consistent");
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nonconsist = 1;
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}
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}
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if (nonconsist)
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{
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PrintError ("Stop meshing since surface mesh not consistent");
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throw NgException ("Stop meshing since surface mesh not consistent");
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}
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double globmaxh = mp.maxh;
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for (int k = 1; k <= mesh3d.GetNDomains(); k++)
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{
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if(mp.only3D_domain_nr && mp.only3D_domain_nr !=k)
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continue;
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return;
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if (multithread.terminate)
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break;
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return;
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PrintMessage (2, "");
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PrintMessage (1, "Meshing subdomain ", k, " of ", mesh3d.GetNDomains());
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(*testout) << "Meshing subdomain " << k << endl;
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mp.maxh = min2 (globmaxh, mesh3d.MaxHDomain(k));
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mp.maxh = min2 (mp.maxh, mesh3d.MaxHDomain(k));
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mesh3d.CalcSurfacesOfNode();
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mesh3d.FindOpenElements(k);
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if (!mesh3d.GetNOpenElements())
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continue;
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return;
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@ -311,9 +260,85 @@ namespace netgen
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PrintMessage (1, mesh3d.GetNP(), " points, ",
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mesh3d.GetNE(), " elements");
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{
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if(mp.only3D_domain_nr && mp.only3D_domain_nr !=k)
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return;
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PrintMessage (3, "Check subdomain ", k, " / ", mesh3d.GetNDomains());
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mesh3d.FindOpenElements(k);
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bool res = (mesh3d.CheckConsistentBoundary() != 0);
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if (res)
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{
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PrintError ("Surface mesh not consistent");
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throw NgException ("Stop meshing since surface mesh not consistent");
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}
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}
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}
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mp.maxh = globmaxh;
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void MergeMeshes( Mesh & mesh, FlatArray<Mesh> meshes, PointIndex first_new_pi )
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{
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static Timer t("MergeMeshes"); RegionTimer rt(t);
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for(auto & m : meshes)
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{
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Array<PointIndex, PointIndex> pmap(m.Points().Size());
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for(auto pi : Range(PointIndex(PointIndex::BASE), first_new_pi))
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pmap[pi] = pi;
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for (auto pi : Range(first_new_pi, m.Points().Range().Next()))
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pmap[pi] = mesh.AddPoint(m[pi]);
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for ( auto el : m.VolumeElements() )
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{
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for (auto i : Range(el.GetNP()))
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el[i] = pmap[el[i]];
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mesh.AddVolumeElement(el);
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}
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}
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}
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// extern double teterrpow;
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MESHING3_RESULT MeshVolume (const MeshingParameters & mp, Mesh& mesh3d)
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{
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static Timer t("MeshVolume"); RegionTimer reg(t);
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if (!mesh3d.HasLocalHFunction()) mesh3d.CalcLocalH(mp.grading);
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mesh3d.Compress();
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// mesh3d.PrintMemInfo (cout);
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if (mp.checkoverlappingboundary)
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if (mesh3d.CheckOverlappingBoundary())
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throw NgException ("Stop meshing since boundary mesh is overlapping");
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if(task_manager)
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{
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Array<Mesh> meshes(mesh3d.GetNDomains()-1);
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auto first_new_pi = mesh3d.Points().Range().Next();
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for(auto & m : meshes)
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{
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m = mesh3d;
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m.SetLocalH(mesh3d.GetLocalH());
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}
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ParallelFor(Range(1, mesh3d.GetNDomains()+1), [&](int k)
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{
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if(k==1)
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MeshDomain(mesh3d, mp, k);
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else
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MeshDomain(meshes[k-2], mp, k);
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});
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MergeMeshes(mesh3d, meshes, first_new_pi);
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}
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else
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for (int k = 1; k <= mesh3d.GetNDomains(); k++)
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MeshDomain(mesh3d, mp, k);
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MeshQuality3d (mesh3d);
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@ -1144,10 +1144,13 @@ void Meshing3 :: BlockFillLocalH (Mesh & mesh,
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if (mp.maxh < maxh) maxh = mp.maxh;
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auto loch_ptr = mesh.LocalHFunction().Copy();
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auto & loch = *loch_ptr;
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bool changed;
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do
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{
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mesh.LocalHFunction().ClearFlags();
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loch.ClearFlags();
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for (int i = 1; i <= adfront->GetNF(); i++)
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{
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@ -1161,21 +1164,21 @@ void Meshing3 :: BlockFillLocalH (Mesh & mesh,
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double filld = filldist * bbox.Diam();
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bbox.Increase (filld);
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mesh.LocalHFunction().CutBoundary (bbox); // .PMin(), bbox.PMax());
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loch.CutBoundary (bbox); // .PMin(), bbox.PMax());
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}
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// locadfront = adfront;
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mesh.LocalHFunction().FindInnerBoxes (adfront, NULL);
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loch.FindInnerBoxes (adfront, NULL);
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npoints.SetSize(0);
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mesh.LocalHFunction().GetInnerPoints (npoints);
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loch.GetInnerPoints (npoints);
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changed = false;
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for (int i = 1; i <= npoints.Size(); i++)
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{
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if (mesh.LocalHFunction().GetH(npoints.Get(i)) > 1.5 * maxh)
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if (loch.GetH(npoints.Get(i)) > 1.5 * maxh)
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{
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mesh.LocalHFunction().SetH (npoints.Get(i), maxh);
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loch.SetH (npoints.Get(i), maxh);
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changed = true;
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}
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}
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@ -82,13 +82,13 @@
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],
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"angles_trig": [
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24.858,
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104.73
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107.08
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],
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"ne1d": 181,
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"ne2d": 313,
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"ne3d": 506,
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"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 6, 13, 25, 47, 64, 85, 94, 100, 51, 17]",
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"total_badness": 650.35553401
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"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 4, 13, 28, 45, 66, 88, 88, 95, 57, 18]",
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"total_badness": 650.55380342
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}
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],
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"boxcyl.geo": [
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@ -1840,9 +1840,9 @@
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],
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"ne1d": 174,
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"ne2d": 1190,
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"ne3d": 5113,
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"quality_histogram": "[0, 0, 15, 128, 183, 43, 57, 114, 124, 184, 294, 387, 492, 590, 635, 626, 528, 418, 234, 61]",
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"total_badness": 8982.334633
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"ne3d": 5073,
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"quality_histogram": "[0, 0, 15, 128, 183, 44, 57, 112, 124, 171, 322, 373, 483, 622, 623, 558, 526, 429, 240, 63]",
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"total_badness": 8929.8790628
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},
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{
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"angles_tet": [
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@ -1865,14 +1865,14 @@
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169.26
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],
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"angles_trig": [
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8.6573,
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161.61
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8.6562,
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161.62
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],
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"ne1d": 132,
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"ne2d": 812,
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"ne3d": 2514,
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"quality_histogram": "[0, 0, 7, 63, 69, 154, 134, 117, 148, 199, 247, 286, 257, 214, 177, 162, 120, 92, 45, 23]",
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"total_badness": 5239.4475113
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"ne3d": 2498,
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"quality_histogram": "[0, 0, 7, 63, 69, 153, 138, 115, 153, 201, 253, 273, 267, 201, 164, 161, 120, 95, 44, 21]",
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"total_badness": 5225.1671437
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},
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{
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"angles_tet": [
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@ -1885,39 +1885,39 @@
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],
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"ne1d": 174,
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"ne2d": 1190,
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"ne3d": 5067,
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"quality_histogram": "[0, 0, 14, 117, 182, 41, 52, 114, 110, 155, 268, 313, 495, 590, 645, 645, 535, 485, 238, 68]",
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"total_badness": 8750.9467413
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"ne3d": 4995,
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"quality_histogram": "[0, 0, 14, 117, 182, 40, 52, 109, 106, 145, 275, 310, 458, 591, 622, 604, 541, 495, 267, 67]",
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"total_badness": 8621.0579835
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},
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{
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"angles_tet": [
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12.76,
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147.23
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14.607,
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144.88
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],
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"angles_trig": [
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15.824,
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16.508,
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143.02
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],
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"ne1d": 248,
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"ne2d": 2320,
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"ne3d": 16409,
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"quality_histogram": "[0, 0, 0, 0, 0, 4, 20, 55, 119, 192, 288, 630, 958, 1489, 2106, 2552, 2926, 2613, 1913, 544]",
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"total_badness": 21635.781365
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"ne3d": 16414,
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"quality_histogram": "[0, 0, 0, 0, 0, 4, 22, 61, 107, 178, 334, 607, 1066, 1532, 2200, 2498, 2897, 2655, 1737, 516]",
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"total_badness": 21736.358053
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},
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{
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"angles_tet": [
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18.203,
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17.436,
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144.68
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],
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"angles_trig": [
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17.821,
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130.51
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127.08
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],
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"ne1d": 418,
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"ne2d": 5958,
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"ne3d": 102414,
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"quality_histogram": "[0, 0, 0, 0, 0, 1, 4, 6, 45, 124, 368, 1028, 2576, 5782, 10622, 16119, 21223, 22353, 16809, 5354]",
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"total_badness": 125921.99427
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"ne3d": 100894,
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"quality_histogram": "[0, 0, 0, 0, 0, 1, 5, 7, 34, 114, 369, 997, 2522, 5452, 10512, 15927, 20701, 21949, 16958, 5346]",
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"total_badness": 123900.96306
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}
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],
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"ortho.geo": [
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@ -2092,8 +2092,8 @@
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"period.geo": [
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{
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"angles_tet": [
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13.348,
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152.73
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14.261,
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145.23
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],
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"angles_trig": [
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15.314,
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@ -2101,9 +2101,9 @@
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],
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"ne1d": 344,
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"ne2d": 1118,
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"ne3d": 3303,
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"quality_histogram": "[0, 0, 0, 0, 1, 3, 19, 28, 60, 79, 167, 274, 340, 411, 474, 453, 427, 342, 172, 53]",
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"total_badness": 4787.3615998
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"ne3d": 3285,
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"quality_histogram": "[0, 0, 0, 0, 1, 2, 16, 26, 56, 87, 157, 264, 331, 405, 486, 454, 436, 340, 173, 51]",
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"total_badness": 4744.2301558
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},
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{
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"angles_tet": [
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@ -2133,12 +2133,12 @@
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"ne2d": 566,
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"ne3d": 1302,
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"quality_histogram": "[0, 0, 0, 1, 4, 17, 29, 39, 64, 86, 116, 123, 148, 143, 127, 134, 119, 83, 58, 11]",
|
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"total_badness": 2151.3920824
|
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"total_badness": 2151.3920827
|
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},
|
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{
|
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"angles_tet": [
|
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15.291,
|
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144.92
|
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15.577,
|
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142.87
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],
|
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"angles_trig": [
|
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15.314,
|
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@ -2146,39 +2146,39 @@
|
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],
|
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"ne1d": 344,
|
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"ne2d": 1118,
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"ne3d": 3261,
|
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"quality_histogram": "[0, 0, 0, 0, 1, 2, 14, 23, 49, 62, 156, 225, 323, 419, 476, 458, 421, 385, 185, 62]",
|
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"total_badness": 4648.2224319
|
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"ne3d": 3240,
|
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"quality_histogram": "[0, 0, 0, 0, 1, 2, 15, 22, 54, 65, 154, 226, 315, 404, 494, 459, 406, 383, 179, 61]",
|
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"total_badness": 4628.23351
|
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},
|
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{
|
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"angles_tet": [
|
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21.808,
|
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142.31
|
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21.896,
|
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143.75
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],
|
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"angles_trig": [
|
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23.022,
|
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128.64
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23.103,
|
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123.18
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],
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"ne1d": 480,
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"ne2d": 2248,
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"ne3d": 11618,
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"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 8, 29, 90, 215, 539, 874, 1483, 1964, 2225, 2201, 1553, 437]",
|
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"total_badness": 14695.782197
|
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"ne3d": 11666,
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"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 1, 4, 25, 100, 251, 514, 914, 1518, 1994, 2234, 2110, 1565, 436]",
|
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"total_badness": 14784.15449
|
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},
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{
|
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"angles_tet": [
|
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22.578,
|
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141.63
|
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21.617,
|
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142.69
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],
|
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"angles_trig": [
|
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22.146,
|
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120.55
|
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122.89
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],
|
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"ne1d": 820,
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"ne2d": 6206,
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"ne3d": 68494,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 8, 53, 159, 556, 1496, 3478, 6612, 10914, 14587, 15239, 11731, 3661]",
|
||||
"total_badness": 83666.140475
|
||||
"ne3d": 68535,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 1, 5, 42, 157, 567, 1545, 3554, 6751, 10948, 14379, 15271, 11665, 3650]",
|
||||
"total_badness": 83784.962076
|
||||
}
|
||||
],
|
||||
"plane.stl": [
|
||||
@ -2760,24 +2760,24 @@
|
||||
],
|
||||
"ne1d": 74,
|
||||
"ne2d": 412,
|
||||
"ne3d": 1681,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 5, 5, 17, 18, 30, 48, 94, 133, 194, 249, 242, 240, 204, 159, 43]",
|
||||
"total_badness": 2334.8383469
|
||||
"ne3d": 1688,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 5, 5, 17, 18, 31, 48, 98, 133, 190, 250, 259, 245, 198, 142, 49]",
|
||||
"total_badness": 2349.0686154
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
25.029,
|
||||
138.94
|
||||
24.909,
|
||||
140.9
|
||||
],
|
||||
"angles_trig": [
|
||||
22.069,
|
||||
127.5
|
||||
21.973,
|
||||
127.7
|
||||
],
|
||||
"ne1d": 122,
|
||||
"ne2d": 1076,
|
||||
"ne3d": 14037,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 3, 24, 84, 179, 418, 822, 1431, 2256, 2852, 2929, 2328, 711]",
|
||||
"total_badness": 17344.477334
|
||||
"ne3d": 14075,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 3, 28, 68, 192, 457, 844, 1466, 2272, 2839, 2856, 2353, 697]",
|
||||
"total_badness": 17420.850186
|
||||
}
|
||||
],
|
||||
"square.in2d": [
|
||||
@ -3156,13 +3156,13 @@
|
||||
],
|
||||
"angles_trig": [
|
||||
14.916,
|
||||
130.79
|
||||
132.02
|
||||
],
|
||||
"ne1d": 690,
|
||||
"ne2d": 1670,
|
||||
"ne3d": 5168,
|
||||
"quality_histogram": "[0, 0, 1, 0, 0, 8, 30, 37, 106, 198, 284, 368, 447, 559, 691, 708, 596, 539, 460, 136]",
|
||||
"total_badness": 7457.2380943
|
||||
"ne3d": 5169,
|
||||
"quality_histogram": "[0, 0, 1, 0, 1, 7, 31, 35, 107, 196, 275, 376, 451, 556, 687, 707, 599, 545, 457, 138]",
|
||||
"total_badness": 7455.986288
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
@ -3191,8 +3191,8 @@
|
||||
"ne1d": 512,
|
||||
"ne2d": 866,
|
||||
"ne3d": 2373,
|
||||
"quality_histogram": "[0, 0, 0, 5, 9, 17, 44, 69, 124, 143, 189, 210, 313, 383, 339, 233, 138, 87, 46, 24]",
|
||||
"total_badness": 3943.0636847
|
||||
"quality_histogram": "[0, 0, 0, 5, 9, 17, 44, 69, 124, 143, 189, 211, 313, 381, 339, 234, 138, 87, 46, 24]",
|
||||
"total_badness": 3943.062114
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
@ -3201,13 +3201,13 @@
|
||||
],
|
||||
"angles_trig": [
|
||||
14.916,
|
||||
130.79
|
||||
132.02
|
||||
],
|
||||
"ne1d": 690,
|
||||
"ne2d": 1670,
|
||||
"ne3d": 5111,
|
||||
"quality_histogram": "[0, 0, 1, 0, 0, 3, 21, 38, 107, 192, 269, 348, 432, 542, 664, 707, 611, 564, 471, 141]",
|
||||
"total_badness": 7317.6330225
|
||||
"ne3d": 5117,
|
||||
"quality_histogram": "[0, 0, 1, 0, 0, 3, 22, 36, 106, 193, 265, 351, 428, 546, 668, 707, 609, 567, 474, 141]",
|
||||
"total_badness": 7321.564248
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
@ -3220,24 +3220,24 @@
|
||||
],
|
||||
"ne1d": 1050,
|
||||
"ne2d": 3784,
|
||||
"ne3d": 17749,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 3, 14, 35, 69, 180, 557, 1402, 2124, 2373, 2627, 2696, 2716, 2280, 673]",
|
||||
"total_badness": 23160.553922
|
||||
"ne3d": 17750,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 3, 14, 35, 68, 188, 555, 1411, 2124, 2368, 2623, 2700, 2707, 2279, 675]",
|
||||
"total_badness": 23168.68937
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
15.34,
|
||||
149.42
|
||||
14.338,
|
||||
149.44
|
||||
],
|
||||
"angles_trig": [
|
||||
20.032,
|
||||
19.234,
|
||||
129.78
|
||||
],
|
||||
"ne1d": 1722,
|
||||
"ne2d": 10022,
|
||||
"ne3d": 85138,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 3, 49, 1423, 714, 399, 655, 1222, 2404, 5670, 9020, 13424, 16402, 16956, 12744, 4053]",
|
||||
"total_badness": 108990.18852
|
||||
"ne3d": 84843,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 2, 47, 1403, 696, 390, 665, 1234, 2433, 5392, 8824, 13169, 16695, 17000, 12791, 4102]",
|
||||
"total_badness": 108464.06506
|
||||
}
|
||||
],
|
||||
"twobricks.geo": [
|
||||
@ -3318,18 +3318,18 @@
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
28.752,
|
||||
130.07
|
||||
28.509,
|
||||
131.79
|
||||
],
|
||||
"angles_trig": [
|
||||
25.5,
|
||||
109.19
|
||||
27.418,
|
||||
108.8
|
||||
],
|
||||
"ne1d": 186,
|
||||
"ne2d": 334,
|
||||
"ne3d": 596,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 21, 35, 49, 93, 105, 118, 99, 54, 17]",
|
||||
"total_badness": 770.34262233
|
||||
"ne3d": 589,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 20, 31, 52, 90, 109, 114, 101, 59, 8]",
|
||||
"total_badness": 760.70063244
|
||||
}
|
||||
],
|
||||
"twocubes.geo": [
|
||||
@ -3410,18 +3410,18 @@
|
||||
},
|
||||
{
|
||||
"angles_tet": [
|
||||
28.752,
|
||||
130.07
|
||||
28.509,
|
||||
131.79
|
||||
],
|
||||
"angles_trig": [
|
||||
25.5,
|
||||
109.19
|
||||
27.418,
|
||||
108.8
|
||||
],
|
||||
"ne1d": 186,
|
||||
"ne2d": 334,
|
||||
"ne3d": 596,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 21, 35, 49, 93, 105, 118, 99, 54, 17]",
|
||||
"total_badness": 770.34262233
|
||||
"ne3d": 589,
|
||||
"quality_histogram": "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 20, 31, 52, 90, 109, 114, 101, 59, 8]",
|
||||
"total_badness": 760.70063244
|
||||
}
|
||||
],
|
||||
"twocyl.geo": [
|
||||
|
||||
Loading…
Reference in New Issue
Block a user