mirror of
https://github.com/NGSolve/netgen.git
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identify vertices without sub-group
This commit is contained in:
Joachim Schöberl
parent
c0a3cd0ff9
commit
aac584a5aa
@ -382,8 +382,6 @@ namespace netgen
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void ParallelMeshTopology :: IdentifyVerticesAfterRefinement()
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{
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static Timer t("ParallelTopology::UpdateCoarseGrid"); RegionTimer r(t);
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// cout << "UpdateCoarseGrid" << endl;
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// if (is_updated) return;
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NgMPI_Comm comm = mesh.GetCommunicator();
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int id = comm.Rank();
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@ -401,66 +399,17 @@ namespace netgen
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PrintMessage (1, "update parallel topology");
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// UpdateCoarseGridGlobal();
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// MPI_Barrier (MPI_COMM_WORLD);
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MPI_Group MPI_GROUP_comm;
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MPI_Group MPI_LocalGroup;
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MPI_Comm MPI_LocalComm1;
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int process_ranks[] = { 0 };
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MPI_Comm_group (comm, &MPI_GROUP_comm);
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MPI_Group_excl (MPI_GROUP_comm, 1, process_ranks, &MPI_LocalGroup);
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MPI_Comm_create (comm, MPI_LocalGroup, &MPI_LocalComm1);
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if (id == 0)
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{
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// SetNV(0);
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// EnumeratePointsGlobally();
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return;
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}
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NgMPI_Comm MPI_LocalComm(MPI_LocalComm1);
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const MeshTopology & topology = mesh.GetTopology();
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NgArray<int> cnt_send(ntasks-1);
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NgArray<int> cnt_send(ntasks);
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int maxsize = comm.AllReduce (mesh.mlbetweennodes.Size(), MPI_MAX);
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// update new vertices after mesh-refinement
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if (mesh.mlbetweennodes.Size() > 0)
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if (maxsize > 0)
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{
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// *testout << "have to identify new vertices, nv = " << mesh.GetNV() << endl;
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// cout << "UpdateCoarseGrid - vertices" << endl;
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int newnv = mesh.mlbetweennodes.Size();
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loc2distvert.ChangeSize(mesh.mlbetweennodes.Size());
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/*
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DynamicTable<int> oldtable(loc2distvert.Size());
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for (size_t i = 0; i < loc2distvert.Size(); i++)
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for (auto val : loc2distvert[i])
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oldtable.Add (i, val);
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loc2distvert = DynamicTable<int> (mesh.mlbetweennodes.Size());
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for (size_t i = 0; i < min(loc2distvert.Size(), oldtable.Size()); i++)
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for (auto val : oldtable[i])
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loc2distvert.Add (i, val);
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*/
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/*
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest = 1; dest < ntasks; dest++)
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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SetDistantPNum(dest, pi);
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}
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*/
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bool changed = true;
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while (changed)
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@ -471,53 +420,32 @@ namespace netgen
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cnt_send = 0;
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantProcs(pi))
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cnt_send[dist-1]++;
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cnt_send[dist]++;
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TABLE<int> dest2vert(cnt_send);
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantProcs(pi))
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dest2vert.Add (dist-1, pi);
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dest2vert.Add (dist, pi);
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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/*
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest : GetDistantPNums(v1-PointIndex::BASE))
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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cnt_send[dest-1]++;
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*/
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if (v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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for (int p : procs1)
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if (procs2.Contains(p))
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cnt_send[p-1]++;
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}
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}
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if (auto [v1,v2] = mesh.mlbetweennodes[pi]; v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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for (int p : procs1)
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if (procs2.Contains(p))
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cnt_send[p]++;
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}
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TABLE<int> dest2pair(cnt_send);
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// for (int dest = 1; dest < ntasks; dest++)
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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/*
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest : GetDistantPNums(v1-PointIndex::BASE))
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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dest2pair.Add (dest-1, pi);
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*/
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if (v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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for (int p : procs1)
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if (procs2.Contains(p))
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dest2pair.Add (p-1, pi);
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}
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for (PointIndex pi : mesh.mlbetweennodes.Range())
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if (auto [v1,v2] = mesh.mlbetweennodes[pi]; v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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for (int p : procs1)
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if (procs2.Contains(p))
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dest2pair.Add (p, pi);
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}
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cnt_send = 0;
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@ -529,65 +457,50 @@ namespace netgen
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for (int p : procs1)
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if (procs2.Contains(p))
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cnt_send[p-1]+=2;
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cnt_send[p]+=2;
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}
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TABLE<int> send_verts(cnt_send);
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NgArray<int, PointIndex::BASE> loc2exchange(mesh.GetNV());
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for (int dest = 1; dest < ntasks; dest++)
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for (int dest = 0; dest < ntasks; dest++)
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if (dest != id)
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{
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loc2exchange = -1;
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int cnt = 0;
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/*
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for (PointIndex pi : mesh.Points().Range())
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if (IsExchangeVert(dest, pi))
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loc2exchange[pi] = cnt++;
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*/
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for (PointIndex pi : dest2vert[dest-1])
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for (PointIndex pi : dest2vert[dest])
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loc2exchange[pi] = cnt++;
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// for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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for (PointIndex pi : dest2pair[dest-1])
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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for (PointIndex pi : dest2pair[dest])
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if (auto [v1,v2] = mesh.mlbetweennodes[pi]; v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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if (v1.IsValid())
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{
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auto procs1 = GetDistantProcs(v1);
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auto procs2 = GetDistantProcs(v2);
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if (procs1.Contains(dest) && procs2.Contains(dest))
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{
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send_verts.Add (dest-1, loc2exchange[v1]);
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send_verts.Add (dest-1, loc2exchange[v2]);
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}
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}
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}
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if (procs1.Contains(dest) && procs2.Contains(dest))
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{
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send_verts.Add (dest, loc2exchange[v1]);
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send_verts.Add (dest, loc2exchange[v2]);
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}
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}
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}
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TABLE<int> recv_verts(ntasks-1);
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MyMPI_ExchangeTable (send_verts, recv_verts, MPI_TAG_MESH+9, MPI_LocalComm);
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TABLE<int> recv_verts(ntasks);
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MyMPI_ExchangeTable (send_verts, recv_verts, MPI_TAG_MESH+9, comm);
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for (int dest = 1; dest < ntasks; dest++)
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for (int dest = 0; dest < ntasks; dest++)
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if (dest != id)
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{
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loc2exchange = -1;
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int cnt = 0;
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/*
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for (PointIndex pi : mesh.Points().Range())
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if (IsExchangeVert(dest, pi))
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loc2exchange[pi] = cnt++;
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*/
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for (PointIndex pi : dest2vert[dest-1])
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for (PointIndex pi : dest2vert[dest])
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loc2exchange[pi] = cnt++;
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NgFlatArray<int> recvarray = recv_verts[dest-1];
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NgFlatArray<int> recvarray = recv_verts[dest];
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for (int ii = 0; ii < recvarray.Size(); ii+=2)
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for (PointIndex pi : dest2pair[dest-1])
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// for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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for (PointIndex pi : dest2pair[dest])
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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@ -604,6 +517,8 @@ namespace netgen
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}
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}
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}
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changed = comm.AllReduce (changed, MPI_LOR);
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}
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}
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@ -621,13 +536,13 @@ namespace netgen
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cnt_send = 0;
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantProcs(pi))
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cnt_send[dist-1]++;
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cnt_send[dist]++;
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TABLE<int> dest2vert(cnt_send);
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantProcs(pi))
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dest2vert.Add (dist-1, pi);
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dest2vert.Add (dist, pi);
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MPI_Group_free(&MPI_LocalGroup);
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// MPI_Group_free(&MPI_LocalGroup);
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// MPI_Comm_free(&MPI_LocalComm);
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}
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@ -680,158 +595,6 @@ namespace netgen
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NgArray<int> cnt_send(ntasks-1);
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#ifdef NONE
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// update new vertices after mesh-refinement
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if (mesh.mlbetweennodes.Size() > 0)
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{
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// cout << "UpdateCoarseGrid - vertices" << endl;
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int newnv = mesh.mlbetweennodes.Size();
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// loc2distvert.ChangeSize(mesh.mlbetweennodes.Size());
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DynamicTable<int> oldtable(loc2distvert.Size());
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for (size_t i = 0; i < loc2distvert.Size(); i++)
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for (auto val : loc2distvert[i])
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oldtable.Add (i, val);
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loc2distvert = DynamicTable<int> (mesh.mlbetweennodes.Size());
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for (size_t i = 0; i < min(loc2distvert.Size(), oldtable.Size()); i++)
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for (auto val : oldtable[i])
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loc2distvert.Add (i, val);
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/*
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest = 1; dest < ntasks; dest++)
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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SetDistantPNum(dest, pi);
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}
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*/
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bool changed = true;
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while (changed)
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{
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changed = false;
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// build exchange vertices
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cnt_send = 0;
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantPNums(pi-PointIndex::BASE))
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cnt_send[dist-1]++;
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TABLE<int> dest2vert(cnt_send);
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for (PointIndex pi : mesh.Points().Range())
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for (int dist : GetDistantPNums(pi-PointIndex::BASE))
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dest2vert.Add (dist-1, pi);
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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// for (int dest = 1; dest < ntasks; dest++)
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for (int dest : GetDistantPNums(v1-PointIndex::BASE))
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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cnt_send[dest-1]++;
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}
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TABLE<int> dest2pair(cnt_send);
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// for (int dest = 1; dest < ntasks; dest++)
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest : GetDistantPNums(v1-PointIndex::BASE))
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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dest2pair.Add (dest-1, pi);
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}
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cnt_send = 0;
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int v1, v2;
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for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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for (int dest : GetDistantPNums(v1-PointIndex::BASE))
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if (IsExchangeVert(dest, v2))
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cnt_send[dest-1]+=2;
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}
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TABLE<int> send_verts(cnt_send);
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NgArray<int, PointIndex::BASE> loc2exchange(mesh.GetNV());
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for (int dest = 1; dest < ntasks; dest++)
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if (dest != id)
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{
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loc2exchange = -1;
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int cnt = 0;
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/*
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for (PointIndex pi : mesh.Points().Range())
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if (IsExchangeVert(dest, pi))
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loc2exchange[pi] = cnt++;
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*/
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for (PointIndex pi : dest2vert[dest-1])
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loc2exchange[pi] = cnt++;
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// for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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for (PointIndex pi : dest2pair[dest-1])
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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if (IsExchangeVert (dest, v1) && IsExchangeVert (dest, v2))
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{
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send_verts.Add (dest-1, loc2exchange[v1]);
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send_verts.Add (dest-1, loc2exchange[v2]);
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}
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}
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}
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TABLE<int> recv_verts(ntasks-1);
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MyMPI_ExchangeTable (send_verts, recv_verts, MPI_TAG_MESH+9, MPI_LocalComm);
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for (int dest = 1; dest < ntasks; dest++)
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if (dest != id)
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{
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loc2exchange = -1;
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int cnt = 0;
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/*
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for (PointIndex pi : mesh.Points().Range())
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if (IsExchangeVert(dest, pi))
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loc2exchange[pi] = cnt++;
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*/
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for (PointIndex pi : dest2vert[dest-1])
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loc2exchange[pi] = cnt++;
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NgFlatArray<int> recvarray = recv_verts[dest-1];
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for (int ii = 0; ii < recvarray.Size(); ii+=2)
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for (PointIndex pi : dest2pair[dest-1])
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// for (PointIndex pi = PointIndex::BASE; pi < newnv+PointIndex::BASE; pi++)
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{
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PointIndex v1 = mesh.mlbetweennodes[pi][0];
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PointIndex v2 = mesh.mlbetweennodes[pi][1];
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if (mesh.mlbetweennodes[pi][0] != PointIndex::BASE-1)
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{
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INDEX_2 re(recvarray[ii], recvarray[ii+1]);
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INDEX_2 es(loc2exchange[v1], loc2exchange[v2]);
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if (es == re && !IsExchangeVert(dest, pi))
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{
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SetDistantPNum(dest, pi);
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changed = true;
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}
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}
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}
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}
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}
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}
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#endif
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// NgArray<int> sendarray, recvarray;
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// cout << "UpdateCoarseGrid - edges" << endl;
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