mirror of
https://github.com/NGSolve/netgen.git
synced 2024-12-24 21:10:33 +05:00
register 1,2,3d elements to numpy to be used in arrays
This commit is contained in:
Christopher Lackner
parent
79b266fac3
commit
c18a317702
@ -701,9 +701,9 @@ namespace netgen
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{
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int hpelnr = -1;
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if (mesh->GetDimension() == 2)
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hpelnr = mesh->SurfaceElement(ei).hp_elnr;
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hpelnr = mesh->SurfaceElement(ei).GetHpElnr();
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else
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hpelnr = mesh->VolumeElement(ei).hp_elnr;
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hpelnr = mesh->VolumeElement(ei).GetHpElnr();
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if (hpelnr < 0)
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throw NgException("Ngx_Mesh::GetHPElementLevel: Wrong hp-element number!");
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@ -1632,7 +1632,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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return mesh.coarsemesh->GetCurvedElements().IsSurfaceElementCurved (hpref_el.coarse_elnr);
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}
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@ -1679,7 +1679,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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// xi umrechnen
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double lami[4];
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@ -2428,7 +2428,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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return mesh.coarsemesh->GetCurvedElements().IsElementCurved (hpref_el.coarse_elnr);
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}
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@ -2480,7 +2480,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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return mesh.coarsemesh->GetCurvedElements().IsElementHighOrder (hpref_el.coarse_elnr);
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}
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@ -2519,7 +2519,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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// xi umrechnen
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double lami[8];
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@ -4065,7 +4065,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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// xi umrechnen
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T lami[4];
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@ -4529,7 +4529,7 @@ namespace netgen
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if (mesh.coarsemesh)
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{
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const HPRefElement & hpref_el =
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(*mesh.hpelements) [mesh[elnr].hp_elnr];
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(*mesh.hpelements) [mesh[elnr].GetHpElnr()];
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// xi umrechnen
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T lami[8];
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@ -1403,7 +1403,7 @@ namespace netgen
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Element2d el(hpel.np);
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for(int j=0;j<hpel.np;j++)
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el.PNum(j+1) = hpel.pnums[j];
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el.hp_elnr = i;
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el.SetHpElnr(i);
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el.SetIndex(hpel.index);
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if(setorders)
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el.SetOrder(act_ref+1,act_ref+1,0);
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@ -1421,7 +1421,7 @@ namespace netgen
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for(int j=0;j<hpel.np;j++)
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el.PNum(j+1) = hpel.pnums[j];
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el.SetIndex(hpel.index);
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el.hp_elnr = i;
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el.SetHpElnr(i);
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if(setorders)
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el.SetOrder(act_ref+1,act_ref+1,act_ref+1);
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if((*mesh.coarsemesh)[ElementIndex{hpel.coarse_elnr}].IsCurved())
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@ -1451,7 +1451,7 @@ namespace netgen
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for(ElementIndex i=0;i<mesh.GetNE(); i++)
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{
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// Element el = mesh[i] ;
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HPRefElement & hpel = hpelements[mesh[i].hp_elnr];
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HPRefElement & hpel = hpelements[mesh[i].GetHpElnr()];
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const ELEMENT_EDGE * edges = MeshTopology::GetEdges1 (mesh[i].GetType());
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double dist[3] = {0,0,0};
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int ord_dir[3] = {0,0,0};
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@ -1523,7 +1523,7 @@ namespace netgen
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for(SurfaceElementIndex i=0;i<mesh.GetNSE(); i++)
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{
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// Element2d el = mesh[i] ;
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HPRefElement & hpel = hpelements[mesh[i].hp_elnr];
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HPRefElement & hpel = hpelements[mesh[i].GetHpElnr()];
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const ELEMENT_EDGE * edges = MeshTopology::GetEdges1 (mesh[i].GetType());
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double dist[3] = {0,0,0};
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int ord_dir[3] = {0,0,0};
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@ -19,7 +19,7 @@ inline void AppendEdges( const Element & elem, PointIndex pi, Array<std::tuple<P
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{ { 0, 1 }, { 0, 2 }, { 0, 3 },
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{ 1, 2 }, { 1, 3 }, { 2, 3 } };
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if(elem.flags.fixed)
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if(elem.Flags().fixed)
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return;
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for (int j = 0; j < 6; j++)
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{
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@ -41,7 +41,7 @@ static ArrayMem<Element, 3> SplitElement (Element old, PointIndex pi0, PointInde
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ArrayMem<Element, 3> new_elements;
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// split element by cutting edge pi0,pi1 at pinew
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auto np = old.GetNP();
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old.flags.illegal_valid = 0;
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old.Flags().illegal_valid = 0;
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if(np == 4)
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{
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// Split tet into two tets
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@ -232,7 +232,7 @@ double MeshOptimize3d :: CombineImproveEdge (Mesh & mesh,
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break;
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}
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elem.flags.illegal_valid = 0;
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elem.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(elem))
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badness_new += 1e4;
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}
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@ -255,7 +255,7 @@ double MeshOptimize3d :: CombineImproveEdge (Mesh & mesh,
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if (elem[l] == pi1)
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elem[l] = pi0;
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elem.flags.illegal_valid = 0;
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elem.Flags().illegal_valid = 0;
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if (!mesh.LegalTet (elem))
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(*testout) << "illegal tet " << ei << endl;
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}
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@ -265,7 +265,7 @@ double MeshOptimize3d :: CombineImproveEdge (Mesh & mesh,
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for (auto ei : has_both_points)
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{
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mesh[ei].flags.illegal_valid = 0;
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mesh[ei].Flags().illegal_valid = 0;
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mesh[ei].Delete();
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}
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}
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@ -505,9 +505,9 @@ double MeshOptimize3d :: SplitImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal, Table
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Element newel1 = oldel;
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Element newel2 = oldel;
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oldel.flags.illegal_valid = 0;
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newel1.flags.illegal_valid = 0;
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newel2.flags.illegal_valid = 0;
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oldel.Flags().illegal_valid = 0;
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newel1.Flags().illegal_valid = 0;
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newel2.Flags().illegal_valid = 0;
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for (int l = 0; l < 4; l++)
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{
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@ -536,11 +536,11 @@ double MeshOptimize3d :: SplitImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal, Table
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Element newel1 = oldel;
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Element newel2 = oldel;
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oldel.flags.illegal_valid = 0;
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oldel.Flags().illegal_valid = 0;
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oldel.Delete();
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newel1.flags.illegal_valid = 0;
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newel2.flags.illegal_valid = 0;
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newel1.Flags().illegal_valid = 0;
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newel2.Flags().illegal_valid = 0;
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for (int l = 0; l < 4; l++)
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{
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@ -799,9 +799,9 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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CalcBad (mesh.Points(), el32, 0) +
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CalcBad (mesh.Points(), el33, 0);
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el31.flags.illegal_valid = 0;
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el32.flags.illegal_valid = 0;
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el33.flags.illegal_valid = 0;
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el31.Flags().illegal_valid = 0;
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el32.Flags().illegal_valid = 0;
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el33.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(el31) ||
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!mesh.LegalTet(el32) ||
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@ -823,8 +823,8 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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bad2 = CalcBad (mesh.Points(), el21, 0) +
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CalcBad (mesh.Points(), el22, 0);
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el21.flags.illegal_valid = 0;
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el22.flags.illegal_valid = 0;
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el21.Flags().illegal_valid = 0;
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el22.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(el21) ||
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!mesh.LegalTet(el22))
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@ -866,8 +866,8 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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mesh[hasbothpoints[1]].Delete();
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mesh[hasbothpoints[2]].Delete();
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el21.flags.illegal_valid = 0;
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el22.flags.illegal_valid = 0;
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el21.Flags().illegal_valid = 0;
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el22.Flags().illegal_valid = 0;
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mesh.AddVolumeElement(el21);
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mesh.AddVolumeElement(el22);
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}
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@ -942,10 +942,10 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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CalcBad (mesh.Points(), el4, 0);
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el1.flags.illegal_valid = 0;
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el2.flags.illegal_valid = 0;
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el3.flags.illegal_valid = 0;
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el4.flags.illegal_valid = 0;
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el1.Flags().illegal_valid = 0;
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el2.Flags().illegal_valid = 0;
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el3.Flags().illegal_valid = 0;
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el4.Flags().illegal_valid = 0;
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if (goal != OPT_CONFORM)
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@ -978,10 +978,10 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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CalcBad (mesh.Points(), el3, 0) +
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CalcBad (mesh.Points(), el4, 0);
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el1.flags.illegal_valid = 0;
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el2.flags.illegal_valid = 0;
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el3.flags.illegal_valid = 0;
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el4.flags.illegal_valid = 0;
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el1.Flags().illegal_valid = 0;
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el2.Flags().illegal_valid = 0;
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el3.Flags().illegal_valid = 0;
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el4.Flags().illegal_valid = 0;
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if (goal != OPT_CONFORM)
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{
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@ -1014,10 +1014,10 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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CalcBad (mesh.Points(), el3b, 0) +
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CalcBad (mesh.Points(), el4b, 0);
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el1b.flags.illegal_valid = 0;
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el2b.flags.illegal_valid = 0;
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el3b.flags.illegal_valid = 0;
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el4b.flags.illegal_valid = 0;
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el1b.Flags().illegal_valid = 0;
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el2b.Flags().illegal_valid = 0;
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el3b.Flags().illegal_valid = 0;
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el4b.Flags().illegal_valid = 0;
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if (goal != OPT_CONFORM)
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{
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@ -1054,10 +1054,10 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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for (auto i : IntRange(4))
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mesh[hasbothpoints[i]].Delete();
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el1.flags.illegal_valid = 0;
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el2.flags.illegal_valid = 0;
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el3.flags.illegal_valid = 0;
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el4.flags.illegal_valid = 0;
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el1.Flags().illegal_valid = 0;
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el2.Flags().illegal_valid = 0;
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el3.Flags().illegal_valid = 0;
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el4.Flags().illegal_valid = 0;
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mesh.AddVolumeElement (el1);
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mesh.AddVolumeElement (el2);
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mesh.AddVolumeElement (el3);
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@ -1068,10 +1068,10 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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for (auto i : IntRange(4))
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mesh[hasbothpoints[i]].Delete();
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el1b.flags.illegal_valid = 0;
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el2b.flags.illegal_valid = 0;
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el3b.flags.illegal_valid = 0;
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el4b.flags.illegal_valid = 0;
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el1b.Flags().illegal_valid = 0;
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el2b.Flags().illegal_valid = 0;
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el3b.Flags().illegal_valid = 0;
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el4b.Flags().illegal_valid = 0;
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mesh.AddVolumeElement (el1b);
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mesh.AddVolumeElement (el2b);
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mesh.AddVolumeElement (el3b);
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@ -1174,7 +1174,7 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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hel[3] = pi2;
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bad2 += CalcBad (mesh.Points(), hel, 0);
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hel.flags.illegal_valid = 0;
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hel.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(hel)) bad2 += 1e4;
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hel[2] = suroundpts[k % nsuround];
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@ -1183,7 +1183,7 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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bad2 += CalcBad (mesh.Points(), hel, 0);
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hel.flags.illegal_valid = 0;
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hel.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(hel)) bad2 += 1e4;
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}
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// (*testout) << "bad2," << l << " = " << bad2 << endl;
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@ -1253,7 +1253,7 @@ double MeshOptimize3d :: SwapImproveEdge (Mesh & mesh, OPTIMIZEGOAL goal,
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hel[1] = suroundpts[k % nsuround];
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hel[2] = suroundpts[(k+1) % nsuround];
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hel[3] = pi2;
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hel.flags.illegal_valid = 0;
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hel.Flags().illegal_valid = 0;
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/*
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(*testout) << nsuround << "-swap, new el,top = "
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@ -1309,7 +1309,7 @@ void MeshOptimize3d :: SwapImprove (Mesh & mesh, OPTIMIZEGOAL goal,
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for (ElementIndex eli : myrange)
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{
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const auto & el = mesh[eli];
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if(el.flags.fixed)
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if(el.Flags().fixed)
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continue;
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for (auto pi : el.PNums())
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@ -2412,9 +2412,9 @@ double MeshOptimize3d :: SwapImprove2 ( Mesh & mesh, OPTIMIZEGOAL goal, ElementI
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CalcBad (mesh.Points(), el33, 0);
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el31.flags.illegal_valid = 0;
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el32.flags.illegal_valid = 0;
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el33.flags.illegal_valid = 0;
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el31.Flags().illegal_valid = 0;
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el32.Flags().illegal_valid = 0;
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el33.Flags().illegal_valid = 0;
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if (!mesh.LegalTet(el31) ||
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!mesh.LegalTet(el32) ||
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@ -2433,9 +2433,9 @@ double MeshOptimize3d :: SwapImprove2 ( Mesh & mesh, OPTIMIZEGOAL goal, ElementI
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if (d_badness<0.0)
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{
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el31.flags.illegal_valid = 0;
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el32.flags.illegal_valid = 0;
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el33.flags.illegal_valid = 0;
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el31.Flags().illegal_valid = 0;
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el32.Flags().illegal_valid = 0;
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el33.Flags().illegal_valid = 0;
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mesh[eli1].Delete();
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mesh[eli2].Delete();
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@ -2655,7 +2655,7 @@ double MeshOptimize3d :: SplitImprove2Element (Mesh & mesh,
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if(badness_after<badness_before)
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{
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PointIndex pinew = mesh.AddPoint (center);
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el.flags.illegal_valid = 0;
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el.Flags().illegal_valid = 0;
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el.Delete();
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for (auto ei1 : has_both_points0)
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@ -599,9 +599,9 @@ namespace netgen
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{
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volelements.Append (el);
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}
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volelements.Last().flags.illegal_valid = 0;
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volelements.Last().flags.fixed = 0;
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volelements.Last().flags.deleted = 0;
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volelements.Last().Flags().illegal_valid = 0;
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volelements.Last().Flags().fixed = 0;
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volelements.Last().Flags().deleted = 0;
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// while (volelements.Size() > eltyps.Size())
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// eltyps.Append (FREEELEMENT);
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@ -622,9 +622,9 @@ namespace netgen
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*/
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volelements[ei] = el;
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volelements[ei].flags.illegal_valid = 0;
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volelements[ei].flags.fixed = 0;
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volelements[ei].flags.deleted = 0;
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volelements[ei].Flags().illegal_valid = 0;
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volelements[ei].Flags().fixed = 0;
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volelements[ei].Flags().deleted = 0;
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}
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@ -3241,7 +3241,7 @@ namespace netgen
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if (dist[el[j]] < elmin)
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elmin = dist[el[j]];
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el.flags.fixed = elmin > layers;
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el.Flags().fixed = elmin > layers;
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// eltyps.Elem(i) = (elmin <= layers) ?
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// FREEELEMENT : FIXEDELEMENT;
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if (elmin <= layers)
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@ -4384,7 +4384,7 @@ namespace netgen
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for (i = 1; i <= ne; i++)
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{
|
||||
Element & el = (Element&) VolumeElement(i);
|
||||
el.flags.badel = 0;
|
||||
el.Flags().badel = 0;
|
||||
int nip = el.GetNIP();
|
||||
for (j = 1; j <= nip; j++)
|
||||
{
|
||||
@ -4393,7 +4393,7 @@ namespace netgen
|
||||
if (det > 0)
|
||||
{
|
||||
PrintError ("Element ", i , " has wrong orientation");
|
||||
el.flags.badel = 1;
|
||||
el.Flags().badel = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
@ -6472,7 +6472,7 @@ namespace netgen
|
||||
|
||||
if (el.GetType() != TET)
|
||||
{
|
||||
VolumeElement(i).flags.badel = 0;
|
||||
VolumeElement(i).Flags().badel = 0;
|
||||
continue;
|
||||
}
|
||||
|
||||
@ -6554,7 +6554,7 @@ namespace netgen
|
||||
}
|
||||
|
||||
|
||||
VolumeElement(i).flags.badel = badel;
|
||||
VolumeElement(i).Flags().badel = badel;
|
||||
if (badel) badtets++;
|
||||
}
|
||||
|
||||
|
||||
@ -365,7 +365,7 @@ namespace netgen
|
||||
Element & operator[] (ElementIndex ei) { return volelements[ei]; }
|
||||
|
||||
ELEMENTTYPE ElementType (ElementIndex i) const
|
||||
{ return (volelements[i].flags.fixed) ? FIXEDELEMENT : FREEELEMENT; }
|
||||
{ return (volelements[i].Flags().fixed) ? FIXEDELEMENT : FREEELEMENT; }
|
||||
|
||||
const auto & VolumeElements() const { return volelements; }
|
||||
auto & VolumeElements() { return volelements; }
|
||||
|
||||
@ -178,62 +178,6 @@ namespace netgen
|
||||
*/
|
||||
}
|
||||
|
||||
Segment::Segment (const Segment & other)
|
||||
:
|
||||
edgenr(other.edgenr),
|
||||
singedge_left(other.singedge_left),
|
||||
singedge_right(other.singedge_right),
|
||||
seginfo(other.seginfo),
|
||||
si(other.si),
|
||||
domin(other.domin),
|
||||
domout(other.domout),
|
||||
tlosurf(other.tlosurf),
|
||||
geominfo(),
|
||||
surfnr1(other.surfnr1),
|
||||
surfnr2(other.surfnr2),
|
||||
epgeominfo(),
|
||||
meshdocval(other.meshdocval),
|
||||
is_curved(other.is_curved),
|
||||
hp_elnr(other.hp_elnr)
|
||||
{
|
||||
for (int j = 0; j < 3; j++)
|
||||
pnums[j] = other.pnums[j];
|
||||
|
||||
geominfo[0] = other.geominfo[0];
|
||||
geominfo[1] = other.geominfo[1];
|
||||
epgeominfo[0] = other.epgeominfo[0];
|
||||
epgeominfo[1] = other.epgeominfo[1];
|
||||
}
|
||||
|
||||
Segment& Segment::operator=(const Segment & other)
|
||||
{
|
||||
if (&other != this)
|
||||
{
|
||||
pnums[0] = other[0];
|
||||
pnums[1] = other[1];
|
||||
edgenr = other.edgenr;
|
||||
singedge_left = other.singedge_left;
|
||||
singedge_right = other.singedge_right;
|
||||
seginfo = other.seginfo;
|
||||
si = other.si;
|
||||
domin = other.domin;
|
||||
domout = other.domout;
|
||||
tlosurf = other.tlosurf;
|
||||
geominfo[0] = other.geominfo[0];
|
||||
geominfo[1] = other.geominfo[1];
|
||||
surfnr1 = other.surfnr1;
|
||||
surfnr2 = other.surfnr2;
|
||||
epgeominfo[0] = other.epgeominfo[0];
|
||||
epgeominfo[1] = other.epgeominfo[1];
|
||||
pnums[2] = other.pnums[2];
|
||||
meshdocval = other.meshdocval;
|
||||
hp_elnr = other.hp_elnr;
|
||||
is_curved = other.is_curved;
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
void Segment :: DoArchive (Archive & ar)
|
||||
{
|
||||
string * bcname_dummy = nullptr;
|
||||
|
||||
@ -128,15 +128,7 @@ namespace netgen
|
||||
EdgePointGeomInfo ()
|
||||
: edgenr(-1), body(0), dist(0.0), u(0.0), v(0.0) { ; }
|
||||
|
||||
|
||||
EdgePointGeomInfo & operator= (const EdgePointGeomInfo & gi2)
|
||||
{
|
||||
edgenr = gi2.edgenr;
|
||||
body = gi2.body;
|
||||
dist = gi2.dist;
|
||||
u = gi2.u; v = gi2.v;
|
||||
return *this;
|
||||
}
|
||||
EdgePointGeomInfo & operator= (const EdgePointGeomInfo & gi2) = default;
|
||||
};
|
||||
|
||||
inline ostream & operator<< (ostream & ost, const EdgePointGeomInfo & gi)
|
||||
@ -430,8 +422,19 @@ namespace netgen
|
||||
|
||||
/// a linked list for all segments in the same face
|
||||
SurfaceElementIndex next;
|
||||
///
|
||||
int hp_elnr;
|
||||
|
||||
public:
|
||||
static auto GetDataLayout()
|
||||
{
|
||||
return std::map<string, int>({
|
||||
{ "pnum", offsetof(Element2d, pnum)},
|
||||
{ "index", offsetof(Element2d, index) },
|
||||
{ "np", offsetof(Element2d, np) }
|
||||
});
|
||||
}
|
||||
|
||||
///
|
||||
DLL_HEADER Element2d ();
|
||||
Element2d (const Element2d &) = default;
|
||||
@ -587,6 +590,8 @@ namespace netgen
|
||||
void SetOrder (int ox, int oy, int /* oz */) { orderx = ox; ordery = oy;}
|
||||
void SetOrder (int ox, int oy) { orderx = ox; ordery = oy;}
|
||||
|
||||
int GetHpElnr() const { return hp_elnr; }
|
||||
void SetHpElnr(int _hp_elnr) { hp_elnr = _hp_elnr; }
|
||||
|
||||
///
|
||||
void GetBox (const T_POINTS & points, Box3d & box) const;
|
||||
@ -679,10 +684,6 @@ namespace netgen
|
||||
bool operator==(const Element2d & el2) const;
|
||||
|
||||
int HasFace(const Element2d& el) const;
|
||||
///
|
||||
int meshdocval;
|
||||
///
|
||||
int hp_elnr;
|
||||
};
|
||||
|
||||
ostream & operator<<(ostream & s, const Element2d & el);
|
||||
@ -719,20 +720,6 @@ namespace netgen
|
||||
ELEMENT_TYPE typ;
|
||||
/// number of points (4..tet, 5..pyramid, 6..prism, 8..hex, 10..quad tet, 12..quad prism)
|
||||
int8_t np;
|
||||
///
|
||||
class flagstruct {
|
||||
public:
|
||||
bool marked:1; // marked for refinement
|
||||
bool badel:1; // angles worse then limit
|
||||
bool reverse:1; // for refinement a la Bey
|
||||
bool illegal:1; // illegal, will be split or swapped
|
||||
bool illegal_valid:1; // is illegal-flag valid ?
|
||||
bool badness_valid:1; // is badness valid ?
|
||||
bool refflag:1; // mark element for refinement
|
||||
bool strongrefflag:1;
|
||||
bool deleted:1; // element is deleted, will be removed from array
|
||||
bool fixed:1; // don't change element in optimization
|
||||
};
|
||||
|
||||
/// sub-domain index
|
||||
int index;
|
||||
@ -747,8 +734,32 @@ namespace netgen
|
||||
float badness;
|
||||
bool is_curved:1; // element is (high order) curved
|
||||
|
||||
class flagstruct {
|
||||
public:
|
||||
bool marked:1; // marked for refinement
|
||||
bool badel:1; // angles worse then limit
|
||||
bool reverse:1; // for refinement a la Bey
|
||||
bool illegal:1; // illegal, will be split or swapped
|
||||
bool illegal_valid:1; // is illegal-flag valid ?
|
||||
bool badness_valid:1; // is badness valid ?
|
||||
bool refflag:1; // mark element for refinement
|
||||
bool strongrefflag:1;
|
||||
bool deleted:1; // element is deleted, will be removed from array
|
||||
bool fixed:1; // don't change element in optimization
|
||||
};
|
||||
|
||||
flagstruct flags;
|
||||
int hp_elnr;
|
||||
public:
|
||||
|
||||
static auto GetDataLayout()
|
||||
{
|
||||
return std::map<string, int>({
|
||||
{ "pnum", offsetof(Element, pnum)},
|
||||
{ "index", offsetof(Element, index) },
|
||||
{ "np", offsetof(Element, np) }
|
||||
});
|
||||
}
|
||||
|
||||
///
|
||||
DLL_HEADER Element () = default;
|
||||
@ -764,6 +775,9 @@ namespace netgen
|
||||
///
|
||||
// Element & operator= (const Element & el2);
|
||||
|
||||
const flagstruct& Flags() const { return flags; }
|
||||
flagstruct& Flags() { return flags; }
|
||||
|
||||
///
|
||||
DLL_HEADER void SetNP (int anp);
|
||||
///
|
||||
@ -909,6 +923,9 @@ namespace netgen
|
||||
///
|
||||
DLL_HEADER void Invert ();
|
||||
|
||||
int GetHpElnr() const { return hp_elnr; }
|
||||
void SetHpElnr(int _hp_elnr) { hp_elnr = _hp_elnr; }
|
||||
|
||||
/// split into 4 node tets
|
||||
void GetTets (NgArray<Element> & locels) const;
|
||||
/// split into 4 node tets, local point nrs
|
||||
@ -993,7 +1010,6 @@ namespace netgen
|
||||
bool IsCurved () const { return is_curved; }
|
||||
void SetCurved (bool acurved) { is_curved = acurved; }
|
||||
|
||||
int hp_elnr;
|
||||
};
|
||||
|
||||
ostream & operator<<(ostream & s, const Element & el);
|
||||
@ -1011,10 +1027,7 @@ namespace netgen
|
||||
public:
|
||||
///
|
||||
DLL_HEADER Segment();
|
||||
DLL_HEADER Segment (const Segment& other);
|
||||
|
||||
~Segment()
|
||||
{ ; }
|
||||
Segment (const Segment& other) = default;
|
||||
|
||||
// friend ostream & operator<<(ostream & s, const Segment & seg);
|
||||
|
||||
@ -1050,10 +1063,8 @@ namespace netgen
|
||||
///
|
||||
int meshdocval;
|
||||
|
||||
private:
|
||||
bool is_curved;
|
||||
|
||||
public:
|
||||
int hp_elnr;
|
||||
/*
|
||||
PointIndex operator[] (int i) const
|
||||
{ return (i == 0) ? p1 : p2; }
|
||||
@ -1062,10 +1073,9 @@ namespace netgen
|
||||
{ return (i == 0) ? p1 : p2; }
|
||||
*/
|
||||
|
||||
Segment& operator=(const Segment & other);
|
||||
Segment& operator=(const Segment & other) = default;
|
||||
|
||||
|
||||
int hp_elnr;
|
||||
|
||||
int GetNP() const
|
||||
{
|
||||
|
||||
@ -434,6 +434,27 @@ DLL_HEADER void ExportNetgenMeshing(py::module &m)
|
||||
}))
|
||||
;
|
||||
|
||||
if(ngcore_have_numpy)
|
||||
{
|
||||
auto data_layout = Element::GetDataLayout();
|
||||
|
||||
py::detail::npy_format_descriptor<Element>::register_dtype({
|
||||
py::detail::field_descriptor {
|
||||
"nodes", data_layout["pnum"],
|
||||
ELEMENT_MAXPOINTS * sizeof(PointIndex),
|
||||
py::format_descriptor<int[ELEMENT_MAXPOINTS]>::format(),
|
||||
py::detail::npy_format_descriptor<int[ELEMENT_MAXPOINTS]>::dtype() },
|
||||
py::detail::field_descriptor {
|
||||
"index", data_layout["index"], sizeof(int),
|
||||
py::format_descriptor<int>::format(),
|
||||
py::detail::npy_format_descriptor<int>::dtype() },
|
||||
py::detail::field_descriptor {
|
||||
"np", data_layout["np"], sizeof(int8_t),
|
||||
py::format_descriptor<signed char>::format(),
|
||||
pybind11::dtype("int8") }
|
||||
});
|
||||
}
|
||||
|
||||
py::class_<Element2d>(m, "Element2D")
|
||||
.def(py::init ([](int index, std::vector<PointIndex> vertices)
|
||||
{
|
||||
@ -493,6 +514,26 @@ DLL_HEADER void ExportNetgenMeshing(py::module &m)
|
||||
}))
|
||||
;
|
||||
|
||||
if(ngcore_have_numpy)
|
||||
{
|
||||
auto data_layout = Element2d::GetDataLayout();
|
||||
py::detail::npy_format_descriptor<Element2d>::register_dtype({
|
||||
py::detail::field_descriptor {
|
||||
"nodes", data_layout["pnum"],
|
||||
ELEMENT2D_MAXPOINTS * sizeof(PointIndex),
|
||||
py::format_descriptor<int[ELEMENT2D_MAXPOINTS]>::format(),
|
||||
py::detail::npy_format_descriptor<int[ELEMENT2D_MAXPOINTS]>::dtype() },
|
||||
py::detail::field_descriptor {
|
||||
"index", data_layout["index"], sizeof(int),
|
||||
py::format_descriptor<int>::format(),
|
||||
py::detail::npy_format_descriptor<int>::dtype() },
|
||||
py::detail::field_descriptor {
|
||||
"np", data_layout["np"], sizeof(int8_t),
|
||||
py::format_descriptor<signed char>::format(),
|
||||
pybind11::dtype("int8") }
|
||||
});
|
||||
}
|
||||
|
||||
py::class_<Segment>(m, "Element1D")
|
||||
.def(py::init([](py::list vertices, py::list surfaces, int index, int edgenr,
|
||||
py::list trignums)
|
||||
@ -557,6 +598,20 @@ DLL_HEADER void ExportNetgenMeshing(py::module &m)
|
||||
}))
|
||||
;
|
||||
|
||||
if(ngcore_have_numpy)
|
||||
{
|
||||
py::detail::npy_format_descriptor<Segment>::register_dtype({
|
||||
py::detail::field_descriptor {
|
||||
"nodes", offsetof(Segment, pnums),
|
||||
3 * sizeof(PointIndex),
|
||||
py::format_descriptor<int[3]>::format(),
|
||||
py::detail::npy_format_descriptor<int[3]>::dtype() },
|
||||
py::detail::field_descriptor {
|
||||
"index", offsetof(Segment, edgenr), sizeof(int),
|
||||
py::format_descriptor<int>::format(),
|
||||
py::detail::npy_format_descriptor<int>::dtype() },
|
||||
});
|
||||
}
|
||||
|
||||
py::class_<Element0d>(m, "Element0D")
|
||||
.def(py::init([](PointIndex vertex, int index)
|
||||
|
||||
@ -414,7 +414,7 @@ namespace netgen
|
||||
{ 2, 4, 9 },
|
||||
{ 3, 4, 10 } };
|
||||
|
||||
int elrev = el.flags.reverse;
|
||||
int elrev = el.Flags().reverse;
|
||||
|
||||
for (int j = 1; j <= 4; j++)
|
||||
pnums.Elem(j) = el.PNum(j);
|
||||
@ -480,10 +480,10 @@ namespace netgen
|
||||
for (int k = 1; k <= 4; k++)
|
||||
nel.PNum(k) = pnums.Get(reftab[j][k-1]);
|
||||
nel.SetIndex(ind);
|
||||
nel.flags.reverse = reverse[j];
|
||||
nel.Flags().reverse = reverse[j];
|
||||
if (elrev)
|
||||
{
|
||||
nel.flags.reverse = !nel.flags.reverse;
|
||||
nel.Flags().reverse = !nel.Flags().reverse;
|
||||
swap (nel.PNum(3), nel.PNum(4));
|
||||
}
|
||||
|
||||
@ -794,10 +794,10 @@ namespace netgen
|
||||
if (mesh.VolumeElement(i).Volume(mesh.Points()) < 0)
|
||||
{
|
||||
wrongels++;
|
||||
mesh.VolumeElement(i).flags.badel = 1;
|
||||
mesh.VolumeElement(i).Flags().badel = 1;
|
||||
}
|
||||
else
|
||||
mesh.VolumeElement(i).flags.badel = 0;
|
||||
mesh.VolumeElement(i).Flags().badel = 0;
|
||||
|
||||
if (wrongels)
|
||||
{
|
||||
@ -900,14 +900,14 @@ namespace netgen
|
||||
if (mesh.VolumeElement(i).Volume(mesh.Points()) < 0)
|
||||
{
|
||||
wrongels++;
|
||||
mesh.VolumeElement(i).flags.badel = 1;
|
||||
mesh.VolumeElement(i).Flags().badel = 1;
|
||||
(*testout) << "wrong el: ";
|
||||
for (int j = 1; j <= 4; j++)
|
||||
(*testout) << mesh.VolumeElement(i).PNum(j) << " ";
|
||||
(*testout) << endl;
|
||||
}
|
||||
else
|
||||
mesh.VolumeElement(i).flags.badel = 0;
|
||||
mesh.VolumeElement(i).Flags().badel = 0;
|
||||
}
|
||||
cout << "wrongels = " << wrongels << endl;
|
||||
}
|
||||
|
||||
@ -473,10 +473,10 @@ namespace netgen
|
||||
if (mesh.VolumeElement(i).CalcJacobianBadness (mesh.Points()) > 1e10)
|
||||
{
|
||||
wrongels++;
|
||||
mesh.VolumeElement(i).flags.badel = 1;
|
||||
mesh.VolumeElement(i).Flags().badel = 1;
|
||||
}
|
||||
else
|
||||
mesh.VolumeElement(i).flags.badel = 0;
|
||||
mesh.VolumeElement(i).Flags().badel = 0;
|
||||
|
||||
double facok = 0;
|
||||
double factry;
|
||||
@ -559,7 +559,7 @@ namespace netgen
|
||||
{
|
||||
wrongels++;
|
||||
Element & el = mesh.VolumeElement(i);
|
||||
el.flags.badel = 1;
|
||||
el.Flags().badel = 1;
|
||||
|
||||
|
||||
if (lam < 1e-4)
|
||||
@ -574,7 +574,7 @@ namespace netgen
|
||||
*/
|
||||
}
|
||||
else
|
||||
mesh.VolumeElement(i).flags.badel = 0;
|
||||
mesh.VolumeElement(i).Flags().badel = 0;
|
||||
}
|
||||
cout << "wrongels = " << wrongels << endl;
|
||||
}
|
||||
@ -597,10 +597,10 @@ namespace netgen
|
||||
if (illegalels.Test(i))
|
||||
{
|
||||
cout << "illegal element: " << i << endl;
|
||||
mesh.VolumeElement(i).flags.badel = 1;
|
||||
mesh.VolumeElement(i).Flags().badel = 1;
|
||||
}
|
||||
else
|
||||
mesh.VolumeElement(i).flags.badel = 0;
|
||||
mesh.VolumeElement(i).Flags().badel = 0;
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
@ -1320,7 +1320,7 @@ namespace netgen
|
||||
if (mesh->coarsemesh && mesh->hpelements->Size() == mesh->GetNE() )
|
||||
{
|
||||
const HPRefElement & hpref_el =
|
||||
(*mesh->hpelements) [ (*mesh)[vertels[k]].hp_elnr];
|
||||
(*mesh->hpelements) [ (*mesh)[vertels[k]].GetHpElnr()];
|
||||
(*testout) << "coarse eleme = " << hpref_el.coarse_elnr << endl;
|
||||
}
|
||||
|
||||
|
||||
@ -597,8 +597,8 @@ namespace netgen
|
||||
|
||||
for (int i = 1; i <= mesh->GetNE(); i++)
|
||||
{
|
||||
if (mesh->VolumeElement(i).flags.badel ||
|
||||
mesh->VolumeElement(i).flags.illegal ||
|
||||
if (mesh->VolumeElement(i).Flags().badel ||
|
||||
mesh->VolumeElement(i).Flags().illegal ||
|
||||
(i == vispar.drawelement))
|
||||
{
|
||||
// copy to be thread-safe
|
||||
@ -636,7 +636,7 @@ namespace netgen
|
||||
|
||||
for (ElementIndex ei : mesh->VolumeElements().Range())
|
||||
{
|
||||
if ((*mesh)[ei].flags.badel)
|
||||
if ((*mesh)[ei].Flags().badel)
|
||||
{
|
||||
// copy to be thread-safe
|
||||
Element el = (*mesh)[ei];
|
||||
|
||||
@ -13,5 +13,21 @@ def test_array_numpy():
|
||||
a.NumPy().sort()
|
||||
assert(all(a == array([0,0,2,2,5])))
|
||||
|
||||
def test_mesh_elements_numpy_array_access():
|
||||
from netgen.csg import unit_cube
|
||||
mesh = unit_cube.GenerateMesh()
|
||||
np_els = mesh.Elements3D().NumPy()
|
||||
vol_nodes = np_els["nodes"]
|
||||
indices = np_els["index"]
|
||||
nps = np_els["np"]
|
||||
for nodes, el, index, np in zip(vol_nodes, mesh.Elements3D(), indices, nps):
|
||||
for n1, n2 in zip(nodes, el.vertices):
|
||||
assert n1 == n2
|
||||
for n in nodes[len(el.vertices):]:
|
||||
assert n == 0
|
||||
assert el.index == index
|
||||
assert len(el.vertices) == np
|
||||
|
||||
if __name__ == "__main__":
|
||||
test_array_numpy()
|
||||
test_mesh_elements_numpy_array_access()
|
||||
|
||||
Loading…
Reference in New Issue
Block a user