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Merge remote-tracking branch 'gitlab/master' into ngcore

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This commit is contained in:
Christopher Lackner 2018-12-13 13:19:40 +01:00
commit c5af003bba
12 changed files with 101 additions and 148 deletions
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100
cmake/external_projects/tcltk.cmake
View File

@ -27,85 +27,35 @@ if(APPLE)
set(TCL_DIR ${CMAKE_CURRENT_BINARY_DIR}/dependencies/src/project_tcl)
set(TK_DIR ${CMAKE_CURRENT_BINARY_DIR}/dependencies/src/project_tk)
set(TCL_INCLUDE_PATH ${TCL_DIR}/generic;${TCL_DIR}/macosx)
set(TK_INCLUDE_PATH ${TK_DIR}/generic;${TK_DIR}/macosx;${TK_DIR}/xlib)
find_package(TCL 8.6 REQUIRED)
list(APPEND NETGEN_DEPENDENCIES project_tcl project_tk)
set(TCL_INCLUDE_PATH "${TCL_DIR}/generic;${TCL_DIR}/macosx")
set(TK_INCLUDE_PATH "${TK_DIR}/generic;${TK_DIR}/macosx;${TK_DIR}/xlib")
string(REPLACE ";" "$<SEMICOLON>" TCL_INC "${TCL_INCLUDE_PATH}")
string(REPLACE ";" "$<SEMICOLON>" TK_INC "${TK_INCLUDE_PATH}")
ExternalProject_Add(project_tkdnd
URL "http://sourceforge.net/projects/tkdnd/files/TkDND/TkDND%202.8/tkdnd2.8-src.tar.gz"
URL_MD5 a6d47a996ea957416469b12965d4db91
DEPENDS project_tcl project_tk
DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external_dependencies
PATCH_COMMAND patch -p1 < ${CMAKE_CURRENT_LIST_DIR}/tkdnd_macosx.patch
UPDATE_COMMAND "" # Disable update
BUILD_IN_SOURCE 1
CMAKE_ARGS
-DCMAKE_INSTALL_PREFIX=${CMAKE_INSTALL_PREFIX}/Contents/MacOS
-DTCL_INCLUDE_PATH=${TCL_INC}
-DTK_INCLUDE_PATH=${TK_INC}
-DTK_LIBRARY=${TK_LIBRARY}
-DTCL_LIBRARY=${TCL_LIBRARY}
LOG_DOWNLOAD 1
LOG_CONFIGURE 1
LOG_BUILD 1
LOG_INSTALL 1
)
list(APPEND NETGEN_DEPENDENCIES project_tkdnd)
else()
find_package(TCL 8.5 REQUIRED)
endif()
# set(HOME $ENV{HOME})
# set(tcl_prefix ${CMAKE_INSTALL_PREFIX}/../../)
# ExternalProject_Add(project_tcl
# URL "http://sourceforge.net/projects/tcl/files/Tcl/8.6.4/tcl8.6.4-src.tar.gz"
# URL_MD5 d7cbb91f1ded1919370a30edd1534304
# DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external_dependencies
# UPDATE_COMMAND "" # Disable update
# CONFIGURE_COMMAND ../project_tcl/macosx/configure --enable-threads --enable-framework --prefix=${tcl_prefix} --libdir=${tcl_prefix}/Contents/Frameworks --bindir=${tcl_prefix}/Contents/Frameworks/Tcl.framework/bin
# BUILD_COMMAND make -j4 binaries libraries
# INSTALL_COMMAND make install-binaries install-headers install-libraries install-private-headers
# LOG_DOWNLOAD 1
# LOG_BUILD 1
# LOG_CONFIGURE 1
# LOG_INSTALL 1
# )
#
# ExternalProject_Add(project_tk
# DEPENDS project_tcl
# URL "http://sourceforge.net/projects/tcl/files/Tcl/8.6.4/tk8.6.4-src.tar.gz"
# URL_MD5 261754d7dc2a582f00e35547777e1fea
# DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external_dependencies
# UPDATE_COMMAND "" # Disable update
# CONFIGURE_COMMAND ../project_tk/macosx/configure --enable-aqua=yes --enable-threads --enable-framework --prefix=${tcl_prefix} --libdir=${tcl_prefix}/Contents/Frameworks --bindir=${tcl_prefix}/Contents/Frameworks/Tcl.framework/bin --with-tcl=${tcl_prefix}/Contents/Frameworks/Tcl.framework
# BUILD_COMMAND make -j4 binaries libraries
# INSTALL_COMMAND make install-binaries install-headers install-libraries install-private-headers
# LOG_DOWNLOAD 1
# LOG_BUILD 1
# LOG_CONFIGURE 1
# LOG_INSTALL 1
# )
#
# ExternalProject_Add(project_tkdnd
# URL "https://sourceforge.net/projects/tkdnd/files/OS%20X%20Binaries/TkDND%202.8/tkdnd2.8-OSX-MountainLion.tar.gz"
# URL_MD5 2dbb471b1d66c5f391f3c3c5b71548fb
# DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external_dependencies
# BUILD_IN_SOURCE 1
# CONFIGURE_COMMAND ""
# BUILD_COMMAND ""
# INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_directory . ${CMAKE_INSTALL_PREFIX}/../MacOS
# LOG_DOWNLOAD 1
# LOG_CONFIGURE 1
# LOG_BUILD 1
# LOG_INSTALL 1
# )
#
# list(APPEND NETGEN_DEPENDENCIES project_tcl project_tk project_tkdnd)
# list(APPEND CMAKE_PREFIX_PATH ${CMAKE_INSTALL_PREFIX}../Frameworks)
# set(TCL_INCLUDE_PATH ${CMAKE_INSTALL_PREFIX}/../Frameworks/Tcl.framework/Headers)
# set(TCL_LIBRARY ${CMAKE_INSTALL_PREFIX}/../Frameworks/Tcl.framework)
# set(TK_LIBRARY ${CMAKE_INSTALL_PREFIX}/../Frameworks/Tk.framework)
# set(TK_INCLUDE_PATH ${CMAKE_INSTALL_PREFIX}/../Frameworks/Tk.framework/Headers)
#
ExternalProject_Add(project_tkdnd
URL "http://sourceforge.net/projects/tkdnd/files/TkDND/TkDND%202.8/tkdnd2.8-src.tar.gz"
URL_MD5 a6d47a996ea957416469b12965d4db91
DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external_dependencies
PATCH_COMMAND patch -p1 < ${CMAKE_CURRENT_LIST_DIR}/tkdnd_macosx.patch
UPDATE_COMMAND "" # Disable update
BUILD_IN_SOURCE 1
CONFIGURE_COMMAND ./configure --prefix=${CMAKE_INSTALL_PREFIX}/Contents/MacOS --libdir=${CMAKE_INSTALL_PREFIX}/Contents/MacOS
BUILD_COMMAND make
INSTALL_COMMAND make install
LOG_DOWNLOAD 1
LOG_CONFIGURE 1
LOG_BUILD 1
LOG_INSTALL 1
)
list(APPEND NETGEN_DEPENDENCIES project_tkdnd)
elseif(WIN32)

69
cmake/external_projects/tkdnd_macosx.patch
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@ -1,35 +1,36 @@
diff -Naur orig/tkdnd2.8/configure changed/tkdnd2.8/configure
--- tkdnd2.8/configure 2015-05-13 19:24:32.000000000 +0200
+++ tkdnd2.8/configure 2016-02-22 15:26:37.000000000 +0100
@@ -6145,7 +6145,7 @@
- PKG_CFLAGS="$PKG_CFLAGS -DMAC_TK_COCOA -std=gnu99 -x objective-c -fobjc-gc"
+ PKG_CFLAGS="$PKG_CFLAGS -DMAC_TK_COCOA -std=gnu99 -x objective-c"
diff -Naur orig/tkdnd2.8/configure.in changed/tkdnd2.8/configure.in
--- tkdnd2.8/configure.in 2015-05-13 19:24:32.000000000 +0200
+++ tkdnd2.8/configure.in 2016-02-22 15:26:44.000000000 +0100
@@ -126,7 +126,7 @@
if test "${TEA_WINDOWINGSYSTEM}" = "aqua"; then
TEA_ADD_SOURCES([macosx/macdnd.m])
- TEA_ADD_CFLAGS([-DMAC_TK_COCOA -std=gnu99 -x objective-c -fobjc-gc])
+ TEA_ADD_CFLAGS([-DMAC_TK_COCOA -std=gnu99 -x objective-c])
TEA_ADD_LIBS([-framework Cocoa -framework Carbon])
fi
diff -Naur orig/tkdnd2.8/macosx/macdnd.m changed/tkdnd2.8/macosx/macdnd.m
--- tkdnd2.8/macosx/macdnd.m 2015-07-06 21:49:14.000000000 +0200
+++ tkdnd2.8/macosx/macdnd.m 2016-02-22 15:27:04.000000000 +0100
@@ -16,6 +16,7 @@
#import <tcl.h>
#import <tk.h>
#import <tkInt.h>
+#undef panic
#import <tkMacOSXInt.h>
#import <Cocoa/Cocoa.h>
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 4eb497c..c6424fc 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -43,17 +43,17 @@ IF ( WIN32 )
ELSE ( WIN32 )
## Unix and OS X...
IF ( APPLE )
- SET ( CMAKE_OSX_ARCHITECTURES "x86_64;i386" )
+ SET ( CMAKE_OSX_ARCHITECTURES "x86_64")
FIND_LIBRARY ( COCOA_LIBRARY Cocoa )
INCLUDE_DIRECTORIES ( macosx )
- INCLUDE_DIRECTORIES ( /Library/Frameworks/Tk.framework/Versions/8.6/PrivateHeaders )
- INCLUDE_DIRECTORIES ( /System/Library/Frameworks/Tk.framework/Versions/8.5/Headers/tk-private )
- INCLUDE_DIRECTORIES ( /System/Library/Frameworks/Tk.framework/Versions/8.5/Headers/tk-private )
+# INCLUDE_DIRECTORIES ( /Library/Frameworks/Tk.framework/Versions/8.6/PrivateHeaders )
+# INCLUDE_DIRECTORIES ( /System/Library/Frameworks/Tk.framework/Versions/8.5/Headers/tk-private )
+# INCLUDE_DIRECTORIES ( /System/Library/Frameworks/Tk.framework/Versions/8.5/Headers/tk-private )
ADD_DEFINITIONS ( -DMAC_TK_COCOA -DMAC_OSX_TK)
ADD_DEFINITIONS ( -DMAC_OSX_TK )
ADD_DEFINITIONS ( -std=gnu99 )
ADD_DEFINITIONS ( -x objective-c )
- ADD_DEFINITIONS ( -fobjc-gc )
+# ADD_DEFINITIONS ( -fobjc-gc )
ADD_DEFINITIONS ( -fno-objc-arc )
# ADD_DEFINITIONS ( -fobjc-arc )
LINK_LIBRARIES ( ${COCOA_LIBRARY} )
@@ -125,7 +125,7 @@ SET ( CP ${CMAKE_COMMAND} -E copy )
## Locate Tcl/Tk
## ===========================================================================
MESSAGE ( STATUS "Searching for Tcl/Tk..." )
-FIND_PACKAGE ( TCL REQUIRED )
+#FIND_PACKAGE ( TCL REQUIRED )
FIND_PACKAGE ( TclStub REQUIRED )
## Tcl/Tk info (useful for debug purposes)...

2
external_dependencies/pybind11

@ -1 +1 @@
Subproject commit 2a150736601bb3113877bb673fb934bb60d46ec5
Subproject commit e2b884c33bcde70b2ea562ffa52dd7ebee276d50

23
libsrc/general/ngpython.hpp
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@ -1,28 +1,5 @@
#ifdef NG_PYTHON
// BEGIN EVIL HACK: Patch PyThread_get_key_value/PyThread_tss_get inside pybind11 to avoid deadlocks
// see https://github.com/pybind/pybind11/pull/1211 (please merge!)
#if defined(__GNUG__) && !defined(__clang__)
# pragma GCC diagnostic ignored "-Wattributes"
#endif
#include <Python.h>
#include <pythread.h>
#include <pybind11/cast.h>
#undef PYBIND11_TLS_GET_VALUE
#if PY_VERSION_HEX >= 0x03070000
inline void * PYBIND11_TLS_GET_VALUE(Py_tss_t *state) {
PyThreadState *tstate = (PyThreadState *) PyThread_tss_get(state);
if (!tstate) tstate = PyGILState_GetThisThreadState();
return tstate;
}
#else
inline void * PYBIND11_TLS_GET_VALUE(int state) {
PyThreadState *tstate = (PyThreadState *) PyThread_get_key_value(state);
if (!tstate) tstate = PyGILState_GetThisThreadState();
return tstate;
}
#endif
// END EVIL HACK
#include <pybind11/pybind11.h>
#include <pybind11/operators.h>
#include <pybind11/numpy.h>

25
libsrc/geom2d/genmesh2d.cpp
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@ -207,6 +207,9 @@ namespace netgen
// mesh size restrictions ...
for (auto & point : geompoints)
mesh2d.RestrictLocalH (Point<3> (point(0), point(1), 0), point.hmax);
for (int i = 0; i < splines.Size(); i++)
{
@ -240,7 +243,21 @@ namespace netgen
for (auto mspnt : mp.meshsize_points)
mesh2d.RestrictLocalH (mspnt.pnt, mspnt.h);
// add point elements
for (auto & point : geompoints)
if (point.name.length())
{
Point<3> newp(point(0), point(1), 0);
PointIndex npi = mesh2d.AddPoint (newp, 1, FIXEDPOINT);
mesh2d.AddLockedPoint(npi);
Element0d el(npi, npi);
el.name = point.name;
mesh2d.SetCD2Name(npi, point.name);
mesh2d.pointelements.Append (el);
searchtree.Insert (newp, npi);
}
// first add all vertices (for compatible orientation on periodic bnds)
{
double diam2 = Dist2(pmin, pmax);
@ -584,8 +601,10 @@ namespace netgen
// not complete, use at own risk ...
// meshing.Delaunay(*mesh, domnr, mp);
mp.checkoverlap = 0;
meshing.GenerateMesh (*mesh, mp, h, domnr);
auto res = meshing.GenerateMesh (*mesh, mp, h, domnr);
if (res != 0)
throw NgException("meshing failed");
for (SurfaceElementIndex sei = oldnf; sei < mesh->GetNSE(); sei++)
(*mesh)[sei].SetIndex (domnr);

5
libsrc/geom2d/python_geom2d.cpp
View File

@ -31,7 +31,7 @@ DLL_HEADER void ExportGeom2d(py::module &m)
.def("Load",&SplineGeometry2d::Load)
.def("AppendPoint", FunctionPointer
([](SplineGeometry2d &self, double px, double py, double maxh, double hpref)
([](SplineGeometry2d &self, double px, double py, double maxh, double hpref, string name)
{
Point<2> p;
p(0) = px;
@ -39,10 +39,11 @@ DLL_HEADER void ExportGeom2d(py::module &m)
GeomPoint<2> gp(p);
gp.hmax = maxh;
gp.hpref = hpref;
gp.name = name;
self.geompoints.Append(gp);
return self.geompoints.Size()-1;
}),
py::arg("x"), py::arg("y"), py::arg("maxh") = 1e99, py::arg("hpref")=0)
py::arg("x"), py::arg("y"), py::arg("maxh") = 1e99, py::arg("hpref")=0, py::arg("name")="")
.def("Append", FunctionPointer([](SplineGeometry2d &self, py::list segment, int leftdomain, int rightdomain,
py::object bc, py::object copy, double maxh, double hpref)
{

3
libsrc/gprim/spline.hpp
View File

@ -28,7 +28,8 @@ namespace netgen
double hmax;
/// hp-refinement
double hpref;
///
string name;
///
GeomPoint () { ; }

1
libsrc/include/nginterface_v2_impl.hpp
View File

@ -47,6 +47,7 @@ NGX_INLINE DLL_HEADER Ng_Element Ngx_Mesh :: GetElement<0> (size_t nr) const
Ng_Element ret;
ret.type = NG_PNT;
ret.index = el.index;
ret.mat = &el.name;
ret.points.num = 1;
ret.points.ptr = (int*)&el.pnum;

4
libsrc/interface/CMakeLists.txt
View File

@ -9,9 +9,7 @@ add_library(interface ${NG_LIB_TYPE}
if(NOT WIN32)
target_link_libraries(interface mesh csg geom2d)
if(USE_GUI)
target_link_libraries(interface visual)
endif(USE_GUI)
target_link_libraries(interface visual)
install( TARGETS interface ${NG_INSTALL_DIR})
endif(NOT WIN32)

4
libsrc/meshing/adfront2.cpp
View File

@ -22,7 +22,7 @@ namespace netgen
mgi = new MultiPointGeomInfo (*amgi);
for (int i = 1; i <= mgi->GetNPGI(); i++)
if (mgi->GetPGI(i).trignum <= 0)
cout << "Add FrontPoint2, illegal geominfo = " << mgi->GetPGI(i).trignum << endl;
cout << "WARNING: Add FrontPoint2, illegal geominfo = " << mgi->GetPGI(i).trignum << endl;
}
else
mgi = NULL;
@ -136,7 +136,7 @@ namespace netgen
if (!gi1.trignum || !gi2.trignum)
{
cout << "ERROR: in AdFront::AddLine, illegal geominfo" << endl;
cout << "WARNING: in AdFront::AddLine, illegal geominfo" << endl;
}
lines[li].SetGeomInfo (gi1, gi2);

1
libsrc/meshing/meshtype.hpp
View File

@ -1036,6 +1036,7 @@ namespace netgen
{
public:
PointIndex pnum;
string name;
int index;
Element0d () = default;
Element0d (PointIndex _pnum, int _index)

12
libsrc/occ/CMakeLists.txt
View File

@ -4,13 +4,17 @@ add_library(occ ${NG_LIB_TYPE}
Partition_Loop.cxx Partition_Loop2d.cxx Partition_Loop3d.cxx Partition_Spliter.cxx
occconstruction.cpp occgenmesh.cpp occgeom.cpp occmeshsurf.cpp python_occ.cpp
)
add_library(occvis ${NG_LIB_TYPE} vsocc.cpp)
if(USE_GUI)
add_library(occvis ${NG_LIB_TYPE} vsocc.cpp)
endif(USE_GUI)
if(NOT WIN32)
target_link_libraries( occ ${OCC_LIBRARIES} ${PYTHON_LIBRARIES})
target_link_libraries( occvis occ )
install( TARGETS occ occvis ${NG_INSTALL_DIR})
install( TARGETS occ ${NG_INSTALL_DIR})
if (USE_GUI)
target_link_libraries( occvis occ )
install( TARGETS occvis ${NG_INSTALL_DIR})
endif(USE_GUI)
endif(NOT WIN32)
install(FILES