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parallel

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This commit is contained in:
Joachim Schoeberl 2009-01-25 19:24:07 +00:00
parent f79440b063
commit d3deab7284
8 changed files with 31 additions and 183 deletions
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105
Makefile.in
View File

@ -233,7 +233,6 @@ top_srcdir = @top_srcdir@
ACLOCAL_AMFLAGS = -I m4
METASOURCES = AUTO
SUBDIRS = libsrc ng nglib tutorials doc
TESTS = ng/netgen -batchmode
all: config.h
$(MAKE) $(AM_MAKEFLAGS) all-recursive
@ -428,79 +427,6 @@ GTAGS:
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
check-TESTS: $(TESTS)
@failed=0; all=0; xfail=0; xpass=0; skip=0; ws='[ ]'; \
srcdir=$(srcdir); export srcdir; \
list=' $(TESTS) '; \
if test -n "$$list"; then \
for tst in $$list; do \
if test -f ./$$tst; then dir=./; \
elif test -f $$tst; then dir=; \
else dir="$(srcdir)/"; fi; \
if $(TESTS_ENVIRONMENT) $${dir}$$tst; then \
all=`expr $$all + 1`; \
case " $(XFAIL_TESTS) " in \
*$$ws$$tst$$ws*) \
xpass=`expr $$xpass + 1`; \
failed=`expr $$failed + 1`; \
echo "XPASS: $$tst"; \
;; \
*) \
echo "PASS: $$tst"; \
;; \
esac; \
elif test $$? -ne 77; then \
all=`expr $$all + 1`; \
case " $(XFAIL_TESTS) " in \
*$$ws$$tst$$ws*) \
xfail=`expr $$xfail + 1`; \
echo "XFAIL: $$tst"; \
;; \
*) \
failed=`expr $$failed + 1`; \
echo "FAIL: $$tst"; \
;; \
esac; \
else \
skip=`expr $$skip + 1`; \
echo "SKIP: $$tst"; \
fi; \
done; \
if test "$$failed" -eq 0; then \
if test "$$xfail" -eq 0; then \
banner="All $$all tests passed"; \
else \
banner="All $$all tests behaved as expected ($$xfail expected failures)"; \
fi; \
else \
if test "$$xpass" -eq 0; then \
banner="$$failed of $$all tests failed"; \
else \
banner="$$failed of $$all tests did not behave as expected ($$xpass unexpected passes)"; \
fi; \
fi; \
dashes="$$banner"; \
skipped=""; \
if test "$$skip" -ne 0; then \
skipped="($$skip tests were not run)"; \
test `echo "$$skipped" | wc -c` -le `echo "$$banner" | wc -c` || \
dashes="$$skipped"; \
fi; \
report=""; \
if test "$$failed" -ne 0 && test -n "$(PACKAGE_BUGREPORT)"; then \
report="Please report to $(PACKAGE_BUGREPORT)"; \
test `echo "$$report" | wc -c` -le `echo "$$banner" | wc -c` || \
dashes="$$report"; \
fi; \
dashes=`echo "$$dashes" | sed s/./=/g`; \
echo "$$dashes"; \
echo "$$banner"; \
test -z "$$skipped" || echo "$$skipped"; \
test -z "$$report" || echo "$$report"; \
echo "$$dashes"; \
test "$$failed" -eq 0; \
else :; fi
distdir: $(DISTFILES)
$(am__remove_distdir)
test -d $(distdir) || mkdir $(distdir)
@ -650,7 +576,6 @@ distcleancheck: distclean
$(distcleancheck_listfiles) ; \
exit 1; } >&2
check-am: all-am
$(MAKE) $(AM_MAKEFLAGS) check-TESTS
check: check-recursive
all-am: Makefile config.h
installdirs: installdirs-recursive
@ -741,21 +666,23 @@ uninstall-am:
install-strip
.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
all all-am am--refresh check check-TESTS check-am clean \
clean-generic clean-libtool ctags ctags-recursive dist \
dist-all dist-bzip2 dist-gzip dist-lzma dist-shar dist-tarZ \
dist-zip distcheck distclean distclean-generic distclean-hdr \
distclean-libtool distclean-tags distcleancheck distdir \
distuninstallcheck dvi dvi-am html html-am info info-am \
install install-am install-data install-data-am install-dvi \
install-dvi-am install-exec install-exec-am install-html \
install-html-am install-info install-info-am install-man \
install-pdf install-pdf-am install-ps install-ps-am \
install-strip installcheck installcheck-am installdirs \
installdirs-am maintainer-clean maintainer-clean-generic \
mostlyclean mostlyclean-generic mostlyclean-libtool pdf pdf-am \
ps ps-am tags tags-recursive uninstall uninstall-am
all all-am am--refresh check check-am clean clean-generic \
clean-libtool ctags ctags-recursive dist dist-all dist-bzip2 \
dist-gzip dist-lzma dist-shar dist-tarZ dist-zip distcheck \
distclean distclean-generic distclean-hdr distclean-libtool \
distclean-tags distcleancheck distdir distuninstallcheck dvi \
dvi-am html html-am info info-am install install-am \
install-data install-data-am install-dvi install-dvi-am \
install-exec install-exec-am install-html install-html-am \
install-info install-info-am install-man install-pdf \
install-pdf-am install-ps install-ps-am install-strip \
installcheck installcheck-am installdirs installdirs-am \
maintainer-clean maintainer-clean-generic mostlyclean \
mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
tags tags-recursive uninstall uninstall-am
# TESTS = ng/netgen -batchmode
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:

14
configure.ac
View File

@ -53,13 +53,13 @@ AC_ARG_ENABLE([nglib],
AC_ARG_ENABLE([parallel],
[ --enable-parallel enable mpi parallelization],
[AC_SUBST([MPI_INCLUDES], "-I/opt/mpich/include -DPARALLEL -I/home/joachim/download/metis-4.0/Lib -DMETIS")
AC_SUBST([MPI_LIBS], "-L/home/joachim/download/metis-4.0 -lmetis -L/opt/mpich/ch-p4/lib64 -lmpich")
[AC_SUBST([MPI_INCLUDES], "-I/opt/mpich/include -DPARALLEL -I/usr/share/metis/Lib -DMETIS")
AC_SUBST([MPI_LIBS], "-lmetis -L/opt/mpich/ch-p4/lib -lmpich")
]
)
# [AC_SUBST([MPI_INCLUDES], "-I/opt/mpich/include -DPARALLEL -I/usr/share/metis/Lib -DMETIS")
# AC_SUBST([MPI_LIBS], "-lmetis -L/opt/mpich/ch-p4/lib -lmpich")
# [AC_SUBST([MPI_INCLUDES], "-I/opt/mpich/include -DPARALLEL -I/home/joachim/download/metis-4.0/Lib -DMETIS")
# AC_SUBST([MPI_LIBS], "-L/home/joachim/download/metis-4.0 -lmetis -L/opt/mpich/ch-p4/lib64 -lmpich")
# AC_HEADER_STDC
@ -102,8 +102,8 @@ AC_CONFIG_FILES(Makefile libsrc/Makefile libsrc/csg/Makefile
libsrc/general/Makefile libsrc/geom2d/Makefile libsrc/gprim/Makefile
libsrc/include/Makefile libsrc/interface/Makefile
libsrc/linalg/Makefile libsrc/meshing/Makefile libsrc/occ/Makefile
libsrc/opti/Makefile libsrc/parallel/Makefile
libsrc/stlgeom/Makefile libsrc/visualization/Makefile ng/Makefile
nglib/Makefile tutorials/Makefile doc/Makefile)
libsrc/parallel/Makefile libsrc/stlgeom/Makefile
libsrc/visualization/Makefile ng/Makefile nglib/Makefile
tutorials/Makefile doc/Makefile)
AC_OUTPUT

10
libsrc/linalg/Makefile.in
View File

@ -48,7 +48,8 @@ CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
LTLIBRARIES = $(noinst_LTLIBRARIES)
libla_la_LIBADD =
am_libla_la_OBJECTS = densemat.lo polynomial.lo vector.lo
am_libla_la_OBJECTS = densemat.lo polynomial.lo vector.lo bfgs.lo \
linopt.lo linsearch.lo
libla_la_OBJECTS = $(am_libla_la_OBJECTS)
libla_la_LINK = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) \
$(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \
@ -227,11 +228,11 @@ target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
noinst_HEADERS = densemat.hpp linalg.hpp polynomial.hpp vector.hpp
noinst_HEADERS = densemat.hpp linalg.hpp polynomial.hpp vector.hpp opti.hpp
AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include
METASOURCES = AUTO
noinst_LTLIBRARIES = libla.la
libla_la_SOURCES = densemat.cpp polynomial.cpp vector.cpp
libla_la_SOURCES = densemat.cpp polynomial.cpp vector.cpp bfgs.cpp linopt.cpp linsearch.cpp
libla_la_LDFLAGS = -rdynamic
all: all-am
@ -284,7 +285,10 @@ mostlyclean-compile:
distclean-compile:
-rm -f *.tab.c
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/bfgs.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/densemat.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/linopt.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/linsearch.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/polynomial.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/vector.Plo@am__quote@

52
libsrc/parallel/parallelinterface.hpp
View File

@ -1,52 +0,0 @@
#ifndef FILE_PARALLELINTERFACE
#define FILE_PARALLELINTERFACE
#ifdef PARALLEL
#ifdef __cplusplus
extern "C" {
#endif
// this interface is 0-base !!
// // these functions have O(N) complexity
// int NgPar_Glob2Loc_SurfEl ( int globnum ) ;
// int NgPar_Glob2Loc_VolEl ( int globnum ) ;
// int NgPar_Glob2Loc_Segm ( int globnum ) ;
// int NgPar_Glob2Loc_Vert ( int globnum ) ;
int NgPar_GetLoc2Glob_VolEl ( int locnum );
// int NgPar_GetDistantNodeNums ( int nt, int locnum, int * procs, int * distnum);
// number on distant processor
// gibt anzahl an distant pnums zurueck
// * pnums entspricht Array<int[2] >
int NgPar_GetDistantNodeNums ( int nodetype, int locnum, int * pnums );
int NgPar_GetNDistantNodeNums ( int nodetype, int locnum );
int NgPar_GetDistantPNum ( int proc, int locnum ) ;
int NgPar_GetDistantEdgeNum ( int proc, int locnum ) ;
int NgPar_GetDistantFaceNum ( int proc, int locnum ) ;
int NgPar_GetDistantElNum ( int proc, int locnum );
bool NgPar_IsExchangeFace ( int fnr ) ;
bool NgPar_IsExchangeVert ( int vnum );
bool NgPar_IsExchangeEdge ( int ednum );
bool NgPar_IsExchangeElement ( int elnum );
void NgPar_PrintParallelMeshTopology ();
bool NgPar_IsElementInPartition ( int elnum, int dest );
bool NgPar_IsGhostFace ( int facenum );
bool NgPar_IsGhostEdge ( int edgenum );
#ifdef __cplusplus
}
#endif
#endif
#endif

2
ng/Makefile.in
View File

@ -67,7 +67,6 @@ netgen_DEPENDENCIES = \
$(top_builddir)/libsrc/parallel/libparallel.la \
$(top_builddir)/libsrc/meshing/libmesh.la \
$(top_builddir)/libsrc/gprim/libgprim.la \
$(top_builddir)/libsrc/opti/libopti.la \
$(top_builddir)/libsrc/linalg/libla.la \
$(top_builddir)/libsrc/general/libgeneral.la \
$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) \
@ -280,7 +279,6 @@ netgen_LDADD = $(top_builddir)/libsrc/visualization/libvisual.a \
$(top_builddir)/libsrc/parallel/libparallel.la \
$(top_builddir)/libsrc/meshing/libmesh.la \
$(top_builddir)/libsrc/gprim/libgprim.la \
$(top_builddir)/libsrc/opti/libopti.la \
$(top_builddir)/libsrc/linalg/libla.la \
$(top_builddir)/libsrc/general/libgeneral.la \
$(OCCLIBS) -L$(TK_BIN_DIR)/Togl1.7 $(TOGLLIBDIR) -lTogl1.7 -lGLU $(TK_LIB_SPEC) $(TCL_LIB_SPEC) $(MPI_LIBS)

2
ng/parallelinterface.cpp
View File

@ -3,7 +3,7 @@
#include <meshing.hpp>
#include "../libsrc/parallel/parallelinterface.hpp"
#include "../libsrc/include/parallelinterface.hpp"
namespace netgen
{

14
nglib/Makefile.am
View File

@ -13,7 +13,6 @@ libnglib_la_LIBADD = \
$(top_builddir)/libsrc/parallel/libparallel.la \
$(top_builddir)/libsrc/meshing/libmesh.la \
$(top_builddir)/libsrc/gprim/libgprim.la \
$(top_builddir)/libsrc/opti/libopti.la \
$(top_builddir)/libsrc/linalg/libla.la \
$(top_builddir)/libsrc/general/libgeneral.la $(MPI_LIBS)
@ -27,19 +26,6 @@ ng_vol_LDADD = \
libnglib.la
# $(top_builddir)/libsrc/occ/libocc.la
# $(top_builddir)/libsrc/geom2d/libgeom2d.la
# $(top_builddir)/libsrc/csg/libcsg.la
# $(top_builddir)/libsrc/interface/libinterface.la \
# $(top_builddir)/libsrc/stlgeom/libstl.la \
# $(top_builddir)/libsrc/meshing/libmesh.la
# $(top_builddir)/libsrc/gprim/libgprim.la
# $(top_builddir)/libsrc/opti/libopti.la
# $(top_builddir)/libsrc/linalg/libla.la \
# $(top_builddir)/libsrc/general/libgeneral.la
# ng_vol_LDFLAGS = -rdynamic

15
nglib/Makefile.in
View File

@ -67,7 +67,6 @@ libnglib_la_DEPENDENCIES = \
$(top_builddir)/libsrc/parallel/libparallel.la \
$(top_builddir)/libsrc/meshing/libmesh.la \
$(top_builddir)/libsrc/gprim/libgprim.la \
$(top_builddir)/libsrc/opti/libopti.la \
$(top_builddir)/libsrc/linalg/libla.la \
$(top_builddir)/libsrc/general/libgeneral.la \
$(am__DEPENDENCIES_1)
@ -268,7 +267,6 @@ libnglib_la_LIBADD = \
$(top_builddir)/libsrc/parallel/libparallel.la \
$(top_builddir)/libsrc/meshing/libmesh.la \
$(top_builddir)/libsrc/gprim/libgprim.la \
$(top_builddir)/libsrc/opti/libopti.la \
$(top_builddir)/libsrc/linalg/libla.la \
$(top_builddir)/libsrc/general/libgeneral.la $(MPI_LIBS)
@ -608,19 +606,6 @@ uninstall-am: uninstall-binPROGRAMS uninstall-includeHEADERS \
tags uninstall uninstall-am uninstall-binPROGRAMS \
uninstall-includeHEADERS uninstall-libLTLIBRARIES
# $(top_builddir)/libsrc/occ/libocc.la
# $(top_builddir)/libsrc/geom2d/libgeom2d.la
# $(top_builddir)/libsrc/csg/libcsg.la
# $(top_builddir)/libsrc/interface/libinterface.la \
# $(top_builddir)/libsrc/stlgeom/libstl.la \
# $(top_builddir)/libsrc/meshing/libmesh.la
# $(top_builddir)/libsrc/gprim/libgprim.la
# $(top_builddir)/libsrc/opti/libopti.la
# $(top_builddir)/libsrc/linalg/libla.la \
# $(top_builddir)/libsrc/general/libgeneral.la
# ng_vol_LDFLAGS = -rdynamic
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: