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930 Commits

Author SHA1 Message Date
Joachim Schöberl
3d839c2986 trigger CI 2019-08-18 13:50:22 +02:00
Joachim Schöberl
8973624dfe export right array 2019-08-18 13:25:04 +02:00
Joachim Schöberl
7f6f846eb1 surfelement - indextype 2019-08-18 13:10:58 +02:00
Joachim Schöberl
e89550ec9c polishing improve2, IndirectArray iterator + element access 2019-08-18 12:21:10 +02:00
Joachim Schöberl
afe65337bf Merge branch 'parallel_combine_improve' into 'master' 
Parallelize CombineImprove

See merge request jschoeberl/netgen!201
 2019-08-15 04:55:15 +00:00
Matthias Hochsteger
ad526ef2bc Parallelize CombineImprove 2019-08-14 17:41:26 +02:00
Joachim Schöberl
fb76ef5c70 Merge branch 'segmentindex_operators' into 'master' 
correct increment/decrement operators for segmentindex

See merge request jschoeberl/netgen!199
 2019-08-14 14:12:35 +00:00
Christopher Lackner
c33feee970 segmentindex is 0 based 2019-08-14 14:00:37 +02:00
Christopher Lackner
b416fead82 correct increment/decrement operators for segmentindex 2019-08-14 13:47:52 +02:00
Matthias Hochsteger
f570f31de9 Export ngcore Arrays 2019-08-12 17:47:50 +02:00
Joachim Schöberl
d215ac1025 T_POINTS are now ngcore::Array 2019-08-10 00:21:37 +02:00
Joachim Schöberl
234d441a90 Range::Modify() 2019-08-09 18:10:21 +02:00
Joachim Schöberl
9118ddc63a preparations to switch T_POINTS to ngcore::Array 2019-08-09 15:30:58 +02:00
Joachim Schöberl
c900e0380b unique ptrs in Mesh 2019-08-09 09:02:50 +02:00
Joachim Schöberl
b03705c37d more use of Index types 2019-08-09 00:23:12 +02:00
Christopher Lackner
07a45072c6 Merge branch 'fix_tutorial' into test_tutorials 2019-08-08 11:07:13 +02:00
Christopher Lackner
70a7a1239e fix loop in mesh compress 2019-08-08 11:03:19 +02:00
Christopher Lackner
d7777b10ca add tests for tutorials 2019-08-08 10:12:33 +02:00
Joachim Schöberl
e8960ebae1 use ngscore::Array for surface elements 2019-08-08 08:44:59 +02:00
Joachim Schöberl
a95185a714 Element2d with initializer lists 2019-08-08 07:36:26 +02:00
Joachim Schöberl
4bfe42b305 more PointIndex::BASE 0/1 fixes 2019-08-07 23:32:14 +02:00
Joachim Schöberl
79c958cf83 fixing PointIndex::Valid 2019-08-07 21:21:05 +02:00
Joachim Schöberl
2ccbf18aea initializer 2019-08-07 18:38:24 +02:00
Joachim Schöberl
bcc15fbc30 use PointIndex::INVALID 2019-08-07 18:34:43 +02:00
Joachim Schöberl
88af66d5a0 try with ctor 2019-08-07 18:30:16 +02:00
Joachim Schöberl
1e701d6aac Merge branch 'stlparams_from_python' into 'master' 
STLParams from python

See merge request jschoeberl/netgen!188
 2019-08-07 15:31:42 +00:00
Joachim Schöberl
1b2e5be954 code cleanup 2019-08-07 08:28:57 +02:00
Joachim Schöberl
b5a7678965 remove timer, PointIndex::INVALID 2019-08-07 07:48:15 +02:00
Joachim Schöberl
bbc3661bfe remove timer, PointIndex::INVALID 2019-08-07 07:48:15 +02:00
Christopher Lackner
fd42f24d37 remove any again 2019-08-06 20:03:17 +02:00
Christopher Lackner
9e63ba0943 parse additional kwargs internally as flags to avoid bad_any_cast 
There seem to be somehow multiple py::kwargs classes created in
different libraries, because of this the any_cast is failing.
To circumvent this we attach them to the MeshingParameters object
as flags.
 2019-08-06 17:38:44 +02:00
Christopher Lackner
b2590bf517 Merge branch 'master' into stlparams_from_python 2019-08-06 10:44:58 +02:00
Christopher Lackner
fc1a3da429 meshingparameter only visible in nglib and const ref to funcs 2019-08-06 10:42:53 +02:00
Joachim Schöberl
318a6092e3 mesingparameter.sloppy is int 2019-08-06 10:20:18 +02:00
Christopher Lackner
218bd4c5d2 start work on stlparam from python, strange bad any cast exception 2019-08-02 16:22:53 +02:00
Joachim Schöberl
a73594b738 modern timers, remove vector allocation 2019-08-02 09:43:27 +02:00
Christopher Lackner
0b0a11c4f5 doarchive should not be virtual on non abstact class CurvedElements 2019-07-30 13:45:08 +02:00
Christopher Lackner
8ae2475085 return default geometry if no geometry is set for mesh 2019-07-30 12:40:22 +02:00
Joachim Schöberl
20abe6ec37 make number of vertices per level available 2019-07-29 17:46:09 +02:00
Christopher Lackner
f1fc7e747d fix default argument for meshinparameters 2019-07-29 07:54:38 +02:00
Christopher Lackner
c22ec2dcc2 meshingparameters from python as in gui 2019-07-29 07:11:57 +02:00
Joachim Schöberl
f7fcc67fc7 little modernization 2019-07-28 23:22:47 +02:00
Joachim Schöberl
168df170ec reuse netrules, implant adfront into meshing class 2019-07-28 21:31:05 +02:00
Joachim Schöberl
321bee9b02 little OCC-meshing cleanup 2019-07-28 20:22:48 +02:00
Christopher Lackner
a989babd21 use CreateMPfromKwargs for mesh.GenerateVolumeMesh as well 2019-07-26 17:07:30 +02:00
Christopher Lackner
67189f15f9 inline CreateMPfromkwargs function 2019-07-26 16:51:54 +02:00
Christopher Lackner
0c828bb195 move implementation of CreateMPFromKwargs to cpp file 2019-07-26 16:34:24 +02:00
Christopher Lackner
091494c6b3 cleanup python export, generate mesh functions not monkeypatched 2019-07-25 23:25:58 +02:00
Matthias Hochsteger
134b6e74eb badmax and perrs are not used, so remove them 2019-07-16 12:15:57 +02:00
Matthias Hochsteger
2cc3908847 typ is hardcoded to 1, so init pf directly as local variable 2019-07-16 12:14:19 +02:00
Christopher Lackner
ee4dce0eab arraymem has deleted copy assignment 2019-07-12 13:32:21 +02:00
Joachim Schöberl
1653f56efc Merge branch 'no_pybind_everywhere' into 'master' 
Get rid of pybind11 include in archive.hpp

See merge request jschoeberl/netgen!175
 2019-07-12 06:48:15 +00:00
Matthias Hochsteger
d89b328979 Get rid of pybind11 include in archive.hpp 
Forward-declare pybind11::object and move implementation of
Archive::Shallow() to new header python_ngcore.hpp

All files using the Shallow/Python archive functionality must include
core/python_ngcore.hpp. Missing includes result in link errors, due to
missing instantiations of Archive::Shallow<T>();
 2019-07-11 17:09:59 +02:00
Matthias Hochsteger
ea9fab8c77 Remove limit of max 100 PointGeomInfos, add move assignment to ArrayMem 2019-07-11 13:21:47 +00:00
Matthias Hochsteger
b848bdc237 Fix MPI build 2019-07-10 12:33:01 +02:00
Matthias Hochsteger
c5acbacadb Rename ArrayMem to NgArrayMem 2019-07-09 18:00:12 +02:00
Matthias Hochsteger
2d46d21a52 Rename FlatArray to NgFlatArray 2019-07-09 10:40:35 +02:00
Matthias Hochsteger
cb87362f64 Rename Array to NgArray 2019-07-09 10:39:16 +02:00
Matthias Hochsteger
4aadd29dfc [cmake] Fix libraries privately 2019-06-30 00:54:31 +02:00
Michael Neunteufel
10297c1e6c copy numvertices for optimize2dmesh 2019-06-24 19:43:21 +02:00
Michael Neunteufel
88ec68be65 OptimizeMesh2d works now with curved TRIG6 2019-06-24 19:29:38 +02:00
Michael Neunteufel
a925ef4e65 copy also material and cd3 names in meshclass 2019-06-24 12:45:44 +02:00
Joachim Schöberl
e0f290676f new timers 2019-06-03 10:42:57 +02:00
Joachim Schöberl
bc836f87ef facet curving using GeomInfo, adding overrides 2019-06-03 10:42:57 +02:00
Christopher Lackner
0a08450bfa move testout to ngcore 2019-05-28 13:51:53 +02:00
Christopher Lackner
c7a71148f4 export function to get volume elements adjacent to surface element 2019-05-22 00:25:18 +02:00
Lukas
89a34b865f completely reset topology on master after distributing mesh 2019-04-29 16:44:07 +02:00
Christopher Lackner
0c6b36dca6 remove meshtopology default copy ctor (is deleted anyway) 2019-04-29 13:10:52 +02:00
Matthias Hochsteger
dc4b1c05b9 Handle numbers in correct order (first index, then number of points) 2019-04-26 09:27:29 +02:00
Joachim Schöberl
3de07c25ab little fix for distributing 2d meshes 2019-04-25 22:51:15 +02:00
Matthias Hochsteger
09f6a08f73 Merge branch 'mpi_fix' into 'master' 
fix ReceiveParallelMesh

See merge request jschoeberl/netgen!156
 2019-04-24 09:05:10 +00:00
Joachim Schöberl
f070ac4daf remove detail timers 2019-04-20 10:25:28 +02:00
Lukas
a85b33e345 fix vol el NP for 2-dim meshes 2019-04-19 13:51:37 +02:00
Matthias Hochsteger
db19a44fe8 Merge branch 'fix_uninitialized_values' into 'master' 
fix uninitialized values

See merge request jschoeberl/netgen!153
 2019-04-17 14:45:53 +00:00
Lukas Kogler
fbe660f775 Receive Mesh from python as static method 2019-04-17 12:25:12 +02:00
Lukas Kogler
5423242cd8 fix uninitialized values 2019-04-17 12:24:23 +02:00
Matthias Hochsteger
d6f1cf2bda [cmake] Don't install object libraries on Windows 
Works around following issue with CMake 3.14:
> CMake error : install(EXPORT "netgen-targets" ...) includes target "mesh" which requires target "gprim" that is not in the export set.
 2019-04-16 12:39:56 -07:00
Joachim Schöberl
18feeba999 Merge branch 'mpi_fix' into 'master' 
MPI fix

See merge request jschoeberl/netgen!150
 2019-04-16 11:36:20 +00:00
Lukas
a386ca46d9 delete local memory after redistributing mesh on master. GetElementOfPoint behaves correctly for empty meshes 2019-04-15 17:49:45 +02:00
Joachim Schöberl
e220a252d1 fixes for tet10 and trig6 elements (is_curved, clipping-plane vis) 2019-04-14 07:55:38 +02:00
Christopher Lackner
3b605c9a14 archive numvertices so that secondorder mesh is pickled correctly 2019-04-11 13:57:14 +02:00
Joachim Schöberl
2794dda996 copy mesh from py 2019-04-10 14:13:34 +02:00
Christopher Lackner
a6825d18ca build jacobi pols even if mesh is unpickled and buildcurvedelements is 
never called
 2019-04-06 13:40:37 +02:00
Joachim Schöberl
f6a290e44f modernize ComputeNVertices 2019-03-30 14:02:38 +01:00
Matthias Hochsteger
fefddf14cc DLL_HEADER for meshing functions 2019-03-25 14:01:06 +01:00
Joachim Schöberl
dab8c827fe Constructor for Trafo by rotation along an arbitrary axes, combine trafos 2019-03-25 12:33:16 +01:00
Lukas
05518ea796 fix index 1/0 typo 2019-03-20 17:06:57 +01:00
Lukas
9c4cfb7864 use mesh-communicator in another place 2019-02-28 17:48:18 +01:00
Lukas
fc7381e587 topology does not build faces/edges befire distributing 2019-02-28 17:48:18 +01:00
Matthias Hochsteger
10ef58b54b Merge branch 'fix_curve_mpi' into 'master' 
fix rank/ntasks in curvedelems

See merge request jschoeberl/netgen!140
 2019-02-28 16:11:17 +00:00
Lukas
c1256c3ffd fix typo 2019-02-28 16:46:37 +01:00
Lukas
16421b4be3 fix rank/ntasks in curvedelems 2019-02-28 16:25:31 +01:00
Lukas
7346495135 no stack arrays for names 2019-02-28 12:06:30 +01:00
Lukas
039e6d753f simplify distributing names (and also distribute co-dim 2/3 names) 2019-02-26 11:18:42 +01:00
Lukas
965a6cc387 archive co-dim 3 names 2019-02-26 11:18:11 +01:00
Lukas
a2f81d0337 Fix MPI + empty bc/mat-names. (But that should not happen..) 2019-02-25 16:38:21 +01:00
Lukas
4637854c9b When loading a netgen-mesh, take geometry-info from mesh-file over global geometry. 2019-02-25 16:28:31 +01:00
Lukas
55b0fe17d7 use mesh communicator for rank/size 2019-02-25 16:21:04 +01:00
Joachim Schöberl
179c3bb02f don't store partition in element (most times waste of mem) 2019-02-15 21:01:00 +01:00
Joachim Schöberl
fa3f89d337 use std::vector for binding PointIndex, avoid map 2019-02-15 21:00:59 +01:00
Christopher Lackner
eaf08e5c6f import mesh from other file format from python 2019-02-13 22:39:31 +01:00
Joachim Schöberl
67c24a044c get rid of ng_comm 2019-02-12 22:27:58 +01:00
Joachim Schöberl
734e96c87c get rid of ng_comm 2019-02-12 22:11:55 +01:00
Matthias Hochsteger
bc21e34125 Mesh is MPI-local by default 2019-02-12 16:30:18 +01:00
Matthias Hochsteger
c274126487 Don't allow MPI-parallel GUI 2019-02-12 15:04:34 +01:00
Joachim Schöberl
c6d49734fb default ctor for NgMPI_Comm 2019-02-12 08:03:20 +01:00
Joachim Schöberl
e9f352d8f3 order of export 2019-02-11 23:59:32 +01:00
Joachim Schöberl
9b8f273b14 mpiwrapper 2019-02-11 22:12:29 +01:00
Joachim Schöberl
7aa5c536a8 timers 2019-02-11 21:38:05 +01:00
Joachim Schöberl
9ced2f561f mpi_wrapper 2019-02-11 21:37:28 +01:00
Michael Neunteufel
e8f6ca5c1b merge master 2019-02-11 09:16:22 +01:00
Michael Neunteufel
ba26ddd834 Merge remote-tracking branch 'gitlab/master' into get_surface_point 2019-02-11 09:12:09 +01:00
Michael Neunteufel
9d7c851bd9 (hopefully) fixed point in quad for the last time 2019-02-11 09:11:57 +01:00
Joachim Schöberl
9500f8d8f2 handle 2 ranks case 2019-02-08 22:12:00 +01:00
Joachim Schöberl
8a165ef8f1 subcomms 2019-02-08 20:24:54 +01:00
Joachim Schöberl
bab9d41b1b why was SubComm that complicated ? 2019-02-08 17:20:13 +01:00
Joachim Schöberl
f661e4a30d distribute 2019-02-08 14:22:43 +01:00
Joachim Schöberl
bf9cffa8de Merge branch 'getrefinementlevel' into 'master' 
Getrefinementlevel

See merge request jschoeberl/netgen!106
 2019-02-07 15:10:38 +00:00
Christopher Lackner
d5f1076e17 read tet10, pyramid13, prism15 and hex20 from gmsh 2019-02-06 19:13:51 +01:00
Joachim Schöberl
bb64612179 Merge branch 'typo' into 'master' 
Typo and cout

See merge request jschoeberl/netgen!126
 2019-02-06 14:09:13 +00:00
Lukas
8a711031cc replace cout by PrintMessage 2019-02-06 14:35:32 +01:00
Joachim Schöberl
e42f81b5d5 take care of tolerance in searchtree 2019-02-05 09:02:31 +01:00
Lukas
665acf811d fix typo 2019-02-04 13:12:31 +01:00
Joachim Schöberl
1303e92379 modernize Delaunay 2019-02-03 06:20:52 +01:00
Joachim Schöberl
cc732689c2 start modernizing delaunay 2019-02-02 16:24:30 +01:00
Lukas
e880bff515 DLL_HEADER for ng_comm 2019-02-01 16:12:30 +01:00
Joachim Schöberl
17a457c1fc timers 2019-01-31 18:41:20 +01:00
Lukas
214b5c452d Wrap MPI-communicator on netgen side 2019-01-30 21:03:28 +01:00
Lukas
bc77c763ae remove couts 2019-01-30 20:53:03 +01:00
Lukas
ee24e786af use global communicator in python-mesh 2019-01-30 16:44:22 +01:00
Lukas
0f4ca1c7a7 Fewer ifdefs for MPI. More consistent use of mpi_interface instead of direct MPI calls. 2019-01-30 12:09:40 +01:00
Lukas
ff847e6eff Without MPI, the mesh now has dummy-implementations for Distribute, SendRecvMesh, Get- and SetCommunicator. 2019-01-30 11:24:35 +01:00
Lukas
012d27d41e Fix paralleltop. Clean up mesh loading. 2019-01-29 19:37:58 +01:00
Lukas
c7fb6c7e4a Add a global communicator. The mesh now has a communicator. 2019-01-29 16:10:02 +01:00
Christopher Lackner
21ba19bf10 export __getitem__ and __len__ for Vec 2019-01-24 16:13:22 +01:00
Christopher Lackner
05f22e463d add function to automatically create pml layer around convex 2d geometries 2019-01-23 10:35:20 +01:00
Joachim Schöberl
229d1da5ea use Range iterators 2019-01-19 18:06:40 +01:00
Joachim Schöberl
ec0a2a5ae8 quad8 and hex20 geometric elements 2019-01-19 14:29:02 +01:00
Joachim Schöberl
fcaabd38b7 more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
b6c58a8d63 more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
b6e62f9ebc more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
48186fc54d more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
bd20d044b1 more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
46f53b0d9e more QUAD8 2019-01-19 14:29:02 +01:00
Joachim Schöberl
5776853952 more QUAD8 2019-01-19 14:29:01 +01:00
Joachim Schöberl
ba1463511b more quad8 2019-01-19 14:29:01 +01:00
Joachim Schöberl
66ac2f1a4f hex20 WIP 2019-01-19 14:29:01 +01:00
Matthias Hochsteger
ab15ae12bc [cmake] Export object libs on Windows 2019-01-14 14:47:26 +01:00
Matthias Hochsteger
4aa7e76bd1 MPI-Parallel output of profiler 2019-01-14 13:04:27 +01:00
Matthias Hochsteger
69363e7ff2 Merge remote-tracking branch 'origin/master' into ngcore 2019-01-14 11:13:11 +01:00
Joachim Schöberl
96443e890b timers 2019-01-12 08:19:57 +01:00
Matthias Hochsteger
247b2a2892 [cmake] Replace object libraries with interface libraries 2019-01-08 13:12:24 +01:00
Christopher Lackner
f88cc77cfe move SymbolTable to ngcore 2019-01-02 18:21:52 +01:00
Christopher Lackner
fd3474f5cb logging in ngcore 2018-12-28 13:43:15 +01:00
Christopher Lackner
829defd3eb archive now support python exported objects 2018-12-20 17:01:27 +01:00
Christopher Lackner
099acc9fa1 pickling for all geometry types 2018-12-14 12:01:58 +01:00
Joachim Schöberl
cdd871282e Merge branch 'archive_mesh_curving' into 'master' 
pickle curving of mesh

See merge request jschoeberl/netgen!105
 2018-12-13 17:08:31 +00:00
Christopher Lackner
c5af003bba Merge remote-tracking branch 'gitlab/master' into ngcore 2018-12-13 13:19:40 +01:00
Michael Neunteufel
355eed4818 hp level (should) work now for all singularities in 2D. Maybe also 3D? 2018-12-06 11:23:20 +01:00
Joachim Schöberl
e4d6ff8302 point-sources in 2D 2018-12-04 06:58:12 +01:00
Christopher Lackner
8e29d38fc1 archive works for pointers and shared_ptrs (even with 
mult. inheritance and virtual base classes)
 2018-12-03 16:28:04 +01:00
Christopher Lackner
7bfc48e8f3 start ngcore, archive in there 2018-11-29 18:35:30 +01:00
Christopher Lackner
ec129f6962 fix mesh pickling (if there is no geometry/no curving) 2018-11-22 19:11:49 +01:00
Christopher Lackner
a3d7be7e79 pickle curving of mesh 2018-11-22 16:23:23 +01:00
Joachim Schöberl
361f822316 access 'curved' of 3D elements 2018-11-20 09:36:27 +01:00
Joachim Schöberl
e67c48c094 optimize quad-mapping 2018-11-19 12:41:51 +01:00
Joachim Schöberl
f6a26637de optimization for bilinear quads 2018-11-19 10:57:03 +01:00
Joachim Schöberl
7a4d1f81fc curved attribute 2018-11-17 20:58:08 +01:00
Christopher Lackner
c52cc71a7b seg.cd2i is not set, seg.edgenr is used everywhere else 2018-11-16 11:43:19 +01:00
Christopher Lackner
2dc79a1e04 export get/set status to python 2018-11-06 11:41:04 +01:00
Michael
2a39b426aa add get refinement level function for hp refinement. Works for point singularities 2018-11-05 10:45:33 +01:00
Matthias Hochsteger
b0129d0473 [bugfix] Set element index in CloseSurface() 2018-10-22 17:18:58 +02:00
Michael Neunteufel
1cdc814f4e added BBBND material names 2018-08-07 11:09:03 +02:00
Lukas
47e71acf13 Force segemnts to stick to surface elements in mesh partition. (surf els already stick to cells in 3d) 2018-08-01 10:35:26 +02:00
Lukas
53524579b7 Fixed indention 2018-07-20 14:00:34 +02:00
Lukas
b2ae6210fc removed more output 2018-07-20 13:56:27 +02:00
Lukas
7f424a543a periodic mpi formatted 2018-07-20 13:44:46 +02:00
Lukas
9fd51602b1 less output 2018-07-20 13:29:16 +02:00
Lukas
29cfd7533c Periodic Mesh somewhat working in 2 and 3 dimensions. 2018-07-19 17:33:26 +02:00
Joachim Schöberl
95efdd212d periodic identification doesn't count for prism meshing 2018-06-28 20:54:59 +02:00
Joachim Schöberl
8c56725dcf query coordinate trafo 2018-06-25 19:42:42 +02:00
Joachim Schöberl
c20c2061f4 export SetTransformation 2018-06-25 19:25:17 +02:00
Christopher Lackner
bd58493649 fix for bisection of 2d periodic meshes 2018-06-12 10:08:13 +02:00
Joachim Schöberl
6df972be05 timestamps via interface V2 2018-05-18 21:13:21 +02:00
Joachim Schöberl
aa13a2fbb4 Merge branch 'export_timestamp' into 'master' 
export mesh timestamp to python

See merge request jschoeberl/netgen!84
 2018-05-14 18:52:28 +02:00
Christopher Lackner
375460b75d change timestamp to python private convention 2018-05-14 11:01:27 +02:00
Joachim Schöberl
d9219e6f05 picking geometry with mesh (CSG only by now) 2018-05-12 09:16:02 +02:00
Christopher Lackner
8e73ba68fc export mesh timestamp to python 2018-05-11 10:53:03 +02:00
Joachim Schöberl
66ef426c79 Curve mesh functionality over Ngx_Mesh 2018-05-01 21:20:54 +02:00
Joachim Schöberl
5a320121fd move DoArchive to cpp-file 2018-04-28 12:07:57 +02:00
Joachim Schöberl
0b0616eee8 bug fix table archive 2018-04-28 10:34:46 +02:00
Joachim Schöberl
bda771f86f more archive 2018-04-28 03:42:04 +02:00
Joachim Schöberl
f85b51496f persistent archiving of pointers 2018-04-27 22:34:25 +02:00
Joachim Schöberl
633376972f archiving the mesh 2018-04-27 08:36:22 +02:00
Joachim Schöberl
a985a7bfb1 Merge branch 'curvemanualmeshes' into 'master' 
modify PointBetween for manually generated meshes

See merge request jschoeberl/netgen!83
 2018-04-26 12:31:43 +02:00
Joachim Schöberl
e72d90fcbb Merge branch 'derive_geos_netgengeometry' into 'master' 
derive geometry class in python from NetgenGeometry, gil call guard

See merge request jschoeberl/netgen!82
 2018-04-18 22:00:03 +02:00
Christoph Wintersteiger
ef80db781a modify PointBetween for manually generated meshes 2018-04-18 09:34:41 +02:00
Christopher Lackner
bc520769ba derive geometry class in python from NetgenGeometry, gil call guard 
for generatemesh in 2d
 2018-04-17 19:37:29 +02:00
Christopher Lackner
96f9e01aba release GIL in expensive functions 2018-03-12 22:38:21 +01:00
Joachim Schöberl
07b84024ca enable tables to disable edge/face generation if not needed 2018-03-11 16:28:43 +01:00
Joachim Schöberl
aa8dbac6be export Trafo to py, IdentifyPeriodic with Trafo 2018-03-09 15:29:50 +01:00
Joachim Schöberl
ee7ac2e0a0 fix warnings 2018-03-08 23:47:58 +01:00
Joachim Schöberl
5de403ffd8 py::init constructors 2018-03-08 22:19:11 +01:00
Joachim Schöberl
cf0d3f6682 fix warnings 2018-03-08 21:36:34 +01:00
Christopher Lackner
bdfbf14a39 fix segfault on query non set boundary name in 2D 2018-03-08 14:46:34 +01:00
luz.paz
a10531adb2 Misc. typos 
Found via `codespell -q 3`
 2018-02-06 14:12:24 -05:00
Christopher Lackner
301ba176e5 Python export of second order trigs 2018-01-23 16:45:20 +01:00
Matthias Hochsteger
0b411e1b07 install mydefs.hpp, some DLL_HEADER 
Includes parts of pull request by looooo
https://github.com/NGSolve/netgen/pull/4
 2018-01-23 03:03:47 -08:00
luz.paz
58002505bc Typos 
Found via `codespell`
 2018-01-14 12:18:54 -05:00
Joachim Schöberl
3fffb78a20 more parallel in MeshTopology 2018-01-07 17:33:59 +01:00
Joachim Schöberl
5f2edca91c more parallel in UpdateTopology, optimize Clusters 2018-01-06 18:41:45 +01:00
Joachim Schöberl
19ec4fc9ca more tracing and parallelization 2018-01-04 18:45:07 +01:00
Joachim Schöberl
dca5a01e04 more parallel in topology 2018-01-04 13:00:01 +01:00
Joachim Schöberl
28c7bb27fc include atomic 2018-01-04 12:18:23 +01:00
Joachim Schöberl
789305c3bc more parallelism in netgen-topology 2018-01-04 11:48:45 +01:00
Joachim Schöberl
5469356147 tracer in Netgen 2018-01-04 10:43:34 +01:00
Unknown
afdc1ae85a Misc. typos 
More typo
 2017-12-09 22:21:40 -05:00
Christopher Lackner
bcf5ea67aa GetGeometry from mesh 2017-12-06 14:16:52 +01:00
Joachim Schöberl
38b7c2b8fa added template instantiation 2017-11-24 07:09:28 +01:00
Joachim Schöberl
7cf05d84a8 AVX512 for element-trafos 2017-11-23 21:26:36 +01:00
Joachim Schöberl
1d02f7f104 geometric search tree with hash-table 2017-11-13 11:58:13 +01:00
Joachim Schöberl
af57dd1b72 improve STL makeatlas: searchtree, templetize searchtree 2017-11-10 13:22:20 +01:00
Joachim Schöberl
d02bb9024e fix triangle generation rule (thx to TDM) 2017-11-07 11:36:54 +01:00
Joachim Schöberl
f1917aa2c4 Merge branch 'save_compressed_mesh' into 'master' 
check filename extension when saving a mesh

See merge request !57
 2017-11-06 17:03:31 +01:00
Christoph Wintersteiger
ccc092d2c5 save check of file ending 2017-10-30 13:43:01 +01:00
Joachim Schöberl
712e2c3fb4 Segment array with size_t indexing 2017-10-29 11:31:50 +01:00
Christopher Lackner
2835597c21 export CalcLocalH and SetMaxHDomain to Python 2017-10-12 12:55:07 +02:00
Christoph Wintersteiger
20d6a12192 check extension of filename to ensure that the loading process is successful 2017-09-29 14:47:16 +02:00
Joachim Schöberl
aa97817d08 support of 0D-elements in CSG 2017-09-22 17:02:39 +02:00
Joachim Schöberl
ec39a51e92 assign default geometry in the (Python) mesh ctor 2017-09-22 17:02:39 +02:00
Joachim Schöberl
924edbb3ad fixes thanks to etromme 2017-09-14 13:50:29 +02:00
Joachim Schöberl
045a271c2e dshapes were not computed for SIMDs 2017-09-13 10:46:10 +02:00
Joachim Schöberl
cb9816c244 Add gmsh-import, pybind2.2 ctor for Mesh 2017-09-06 18:08:39 +02:00
Joachim Schöberl
e17939a95b Merge branch 'update_pybind11' into 'master' 
Update pybind11 to version 2.2.0

See merge request !60
 2017-09-02 22:09:34 +02:00
Matthias Hochsteger
1430b89e39 Update pybind11 to version 2.2.0 
- Replace PYBIND11_PLUGIN with PYBIND11_MODULE

- Fix warnings about symbol visibility by replacing
  'namespace pybind11' with 'namespace PYBIND11_NAMESPACE'

- Pybind sets the default visibility of its namespace to 'hidden'
  Thus, our export functions like  ExportCSG(py::module &m) also are
  hidden by default. To work around that define DLL_HEADER
  '__attribute__ ((visibility ("default")))
  on GNUC platforms.
 2017-09-01 10:16:56 +02:00
Joachim Schöberl
7e83edabf1 order of d'tors for global variables: create VSSolution on demand, which is later 2017-08-28 18:19:20 +02:00
Joachim Schöberl
74c8fa5cf4 little polish of bisect 2017-08-27 14:52:57 +02:00
Matthias Hochsteger
d4a2d4c87b Check if mesh file exists before loading 
Also derive NgException from std::exception to print the error message
in Python / on the command line.
 2017-08-24 13:59:16 +02:00
Joachim Schöberl
a0485eece0 wasn't worth it 2017-08-17 20:58:08 +02:00
Joachim Schöberl
b20f428eae to make also gcc-6.3 happy 2017-08-17 20:35:35 +02:00
Joachim Schöberl
3955916ac5 atomic fix 2017-08-17 20:27:41 +02:00
Joachim Schöberl
463c564c98 atomic workaround 2017-08-17 20:24:03 +02:00
Joachim Schöberl
4fe9abcc0e atomic workaround 2017-08-17 20:20:30 +02:00
Joachim Schöberl
5f211234d1 thread-safe insertion of surface elements 2017-08-17 20:08:08 +02:00
Christopher Lackner
180ebbda92 delete edges with negative edgenr in mesh.Compress 2017-08-09 14:31:26 +02:00
Joachim Schöberl
043e3403ba use geometry from mesh on export user format 2017-07-24 22:26:18 +02:00
Joachim Schöberl
046f473619 Merge branch 'master' of data.asc.tuwien.ac.at:jschoeberl/netgen 2017-07-24 21:49:59 +02:00
Joachim Schöberl
8377ab058d switch off creation of hexes per default 2017-07-24 21:49:49 +02:00
Bernd Schwarzenbacher
2a37793f72 Add 3 meshingparameters to python interface 2017-07-24 11:00:56 -04:00
Matthias Hochsteger
0fc62e7920 Some DLL_HEADERs for Windows 2017-07-19 11:26:12 -07:00
Joachim Schöberl
f2f3e92125 second order segments available for Python 2017-06-28 07:23:28 +02:00
Joachim Schöberl
ee476e154d set MeshPoint coordinates 2017-06-26 23:26:09 +02:00
Joachim Schöberl
584f4506a9 Merge branch 'par_fixes' into 'master' 
Par fixes

See merge request !51
 2017-06-21 09:31:12 +02:00
Lukas Kogler
4c0c5aac8c correctly use delete[] instead of delete in python_mesh.cpp 2017-06-20 10:27:26 +02:00
Joachim Schöberl
837e92bb16 set geometry (thx Lukas) 2017-06-12 12:33:20 +02:00
lkogler
1e9e376d2e prettied it all up a bit 2017-06-09 20:56:19 +02:00
Lukas Kogler
3c1596b8a0 Fixed curvedelems+mesh loaded from file via python. Fixed MPI+curvedelems 2017-06-09 20:21:55 +02:00
Lukas Kogler
7e21f0cd9c BC-and Material-names are now working with MPI. 2017-06-08 17:50:37 +02:00
Lukas Kogler
6524c0c170 Merged master 2017-06-06 10:11:41 +02:00
Lukas Kogler
2cc28a960e Removec some cout-output 2017-06-06 09:55:40 +02:00
Joachim Schöberl
e8712aa8ae export Mesh.SecondOrder 2017-05-31 23:44:50 +02:00
Joachim Schöberl
9324121953 smaller int-type for GetNV 2017-05-31 07:54:48 +02:00
Joachim Schöberl
a22e36f182 fix bug for debug output 2017-05-31 07:54:48 +02:00
Joachim Schöberl
feb74d49c2 use static class variable rather then static function variable 2017-05-31 07:54:47 +02:00
Matthias Hochsteger
f6a0b31b96 Cleanup CMake build system 
- Use CMAKE_INSTALL_PREFIX instead of INSTALL_DIR
  - Allow finer control of install directories
  - Use compiled TCL code by default
  - Fix RPATH usage on Linux and MacOSX

### Allow finer control of install directories
The following variables can be set to either absolute or relative paths
NG_INSTALL_DIR_PYTHON: Python files
NG_INSTALL_DIR_BIN: Executables
NG_INSTALL_DIR_LIB: Libraries
NG_INSTALL_DIR_INCLUDE: header files
NG_INSTALL_DIR_CMAKE: CMake files
NG_INSTALL_DIR_RES: Resources

### Use compiled TCL code by default
The tcl files contained in Netgen are stored in onetcl.cpp as c-string.
This way it's not necessary to install tcl files or set NETGENDIR

### Fix RPATH usage on Linux and MacOSX
The Netgen installation should be completely relocatable now.

Squashed commit of the following:

commit 201eda5e62726bd87d76beb13c3e5643cd4c7810
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 21:10:08 2017 +0200

    cleanup

commit b4cd46a9d2f390b40c5223c8d9971f576b979644
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:47:46 2017 +0200

    fix

commit 6506a834dbee2fd7b6df3b3f3709d0b27344356f
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:41:45 2017 +0200

    allow gui test to fail

commit 56c5fc131f61259e6fb67b60f7fff955d2e8d2da
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:26:18 2017 +0200

    add python3-tk to docker images

commit 4d1b5aac1d028867339819599708a08f2098bbd6
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:22:18 2017 -0700

    windows fix

commit 92b5f8a95491ba3508143d7f1b94359edc0655ce
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:08:08 2017 -0700

    fix for windows

commit 3f7bf51434ef3b637b3563930ddb61d04af645cb
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 19:28:13 2017 +0200

    fixes, test for gui

commit ef1d0164a50fadf374e3b1e43a745b5f69a16ad6
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 19:06:55 2017 +0200

    fixes

commit 67645bb896012149c23c851b03287199c21fa129
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 17:24:58 2017 +0200

    netgen config

commit b587b77a282768719cffc366c56d82a1746e0be0
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 16:53:47 2017 +0200

    remove comments

commit 2b34cc78818afa1cf21484bd0976413a91db0851
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 05:03:00 2017 -0700

    fix windows

commit 9e98efa54065624e264eaf1acf74b44ef022a68d
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 13:42:11 2017 +0200

    fixes

commit 394b470a07d73431079f80caa36c7c7042077f40
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 12:24:40 2017 +0200

    fix rpath issue

commit 6787eae384a8592f90598258ccd8207cd499d9fc
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:37:05 2017 +0200

    some more fixes with install dir

commit fcf22659c60300e8d39d12e14b21c58a062e739c
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 01:34:06 2017 -0700

    some fixes

commit ede1f0c462978bb70d3b4e2251cb555a592e82e3
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 10:16:34 2017 +0200

    fixes

commit b6a1259876a77f54e419a44f1b44d03d5bb49b82
Merge: c79f9a3 6627b0b
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Wed May 24 09:35:50 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit c79f9a3421d4d2937c31dab4a601ce09d52b0e54
Merge: 99c3550 030ad1d
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 22 17:52:24 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit 99c35500850e08fdc847013bb384169b1483acb4
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 19 14:37:28 2017 +0200

    fix rpath

commit 8215e9748d9ee225266bc941da1ca252aebd27de
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu May 18 13:29:41 2017 +0200

    remove INSTALL_DIR, rename var to NETGEN_INSTALL_DIR_INCLUDE, install libngpy to python package folder

commit 23d028c4cf7572de9e2e277cda8f6b07b6b1d9f9
Merge: 57027c8 f72a247
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu May 18 12:03:59 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit 57027c8c706ff755bdf26887884bbdeca129fe8f
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 12 17:32:05 2017 +0200

    New CMake option: USE_INTERNAL_TCL (ON by default)

    This option uses the tcl code compiled in onetcl.cpp instead of separate
    tcl files by default. When set at configure time, no tcl files will be
    installed anymore.

commit 27ce5b7edd66d64e2453f5045f5ac08c313f7608
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 12 17:16:52 2017 +0200

    WIP: Cleanup of CMake files

      - Fix RPATH on Linux (TODO: other platforms)
      - New variables to specify install behaviour:
          NG_INSTALL_DIR_BIN
          NG_INSTALL_DIR_LIB
          NG_INSTALL_DIR_CMAKE
          NG_INSTALL_DIR_INCLUDE
 2017-05-29 21:41:27 +02:00
Christopher Lackner
3ba7d2c276 add meshsizefilename to python meshingparameters 2017-05-17 16:04:56 +02:00
Matthias Hochsteger
9a7307fb39 Start GUI from Python only if Netgen exe is not running 2017-05-15 18:56:47 +02:00
Joachim Schöberl
b4f3107fef default material name 2017-05-13 10:24:12 +02:00
Matthias Hochsteger
990d0fce78 GUI support from Python 
Enables experimental support for starting the Netgen GUI from Python
directly.
To use it, just import the gui module:
> import netgen.gui
 2017-05-08 16:42:49 +02:00
Joachim Schöberl
5ed3de978b default constructable/movable tet for bisection-refinement 2017-04-18 08:43:23 +02:00
Joachim Schöberl
ec20b74722 make Element default constructable/movable 2017-04-13 10:40:47 +02:00
Joachim Schöberl
c50bd79beb default constructors assignment operators, cheaper Array-Resize 2017-04-11 21:06:30 +02:00
Joachim Schöberl
5e320a5556 dll-header ? 2017-04-11 10:51:08 +02:00
Joachim Schöberl
e464fe9771 parallel trig-marking for bisection 2017-04-11 10:45:31 +02:00
Joachim Schöberl
0074d8b407 inline GetTimeStamp 2017-04-11 10:45:11 +02:00
Joachim Schöberl
e6b853e995 hashtables roundup to power of 2, optimize bisect 2017-04-11 09:01:36 +02:00
Joachim Schöberl
b68bfdcc73 more parallel 2017-04-06 21:41:26 +02:00
Joachim Schöberl
701d6a2369 inline GetCD2NamePtr 2017-04-03 18:15:34 +02:00
Joachim Schöberl
e1917c8d8a fix warnings 2017-04-03 17:40:01 +02:00
Gerhard Kitzler
8f936f82ea Fix data types for Python exports in python_mesh.cpp 2017-04-03 16:24:56 +02:00
Joachim Schöberl
240a132078 avoid size_t-int narrowing in nginterfacev2 - GetElement 2017-04-01 21:00:12 +02:00
Matthias Hochsteger
5e2d2f685c Fix warnings (Intel compiler) 
ICC complains about ambigous variable 'i' applying old/new scoping rules.
Therefore, use local loop variables in for loops.
 2017-03-23 15:56:08 +01:00
Matthias Hochsteger
9c0f1b5bdb adapt parallelmesh.cpp to commit 90d4c940 (topology is a member of Mesh (rather than pointer)...) 2017-03-07 10:43:38 +01:00
Christopher Lackner
87669acfc6 Merge branch 'master' into fix_splinesurface 2017-02-27 11:27:20 +01:00
Joachim Schöberl
90d4c94028 make Topology a member of Mesh (rather then pointer) to reduce number of pointer dereferencing steps. This required move operators for Array and Table. 2017-02-25 19:48:37 +01:00
Joachim Schöberl
c143aafaea Array resize checks for trivially copyable 2017-02-24 22:29:57 +01:00
Christopher Lackner
89fe31b550 Squashed commit of the following: 
commit fa556baaa222ba349d534027f7203588dcda6ad8
Author: Christopher Lackner <christopher.lackner@tuwien.ac.at>
Date:   Thu Feb 23 15:56:47 2017 +0100

    add python path to docker template

commit 54eb7eedc77ad8c86952c347536e7e1a854b62ed
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu Feb 23 14:59:45 2017 +0100

    install pytest in docker images

commit 3c1c755891e8372762130a6ed8c39cf056430264
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu Feb 23 14:52:32 2017 +0100

    enable CTest properly, add pytest

commit 4c4cf229ab8e7fd6057f535fb05c3079a9278f80
Author: Christopher Lackner <christopher.lackner@tuwien.ac.at>
Date:   Thu Feb 23 14:02:13 2017 +0100

    fix write splinesurface to savemesh

commit 069fbdbc529c9dd91644663f3f365e08be5af70e
Author: Christopher Lackner <christopher.lackner@tuwien.ac.at>
Date:   Thu Feb 23 09:03:26 2017 +0100

    fix lifetime of SplineSurface
 2017-02-23 16:41:27 +01:00
Matthias Hochsteger
002a2cba6b Fix (or work around?) strange bug on Windows 
The definition of std::max uses references for parameters, which leads
to unnecessary storing of constants on the stack. If the stack is
overwritten this leads to wrong results.
max2() works around this using call-by-value.
 2017-02-16 09:12:45 +01:00
Joachim Schöberl
cd314e2f45 few more inline functions 2017-02-15 22:31:24 +01:00
Joachim Schöberl
e190943f4f change bc-names 2017-02-09 10:06:34 +01:00
Joachim Schöberl
fd3d3e28e6 fix warning 2017-02-04 07:48:48 +01:00
Matthias Hochsteger
fa9d918963 Apply patches for OpenCasCade 7 by Lorenz Lechner 
see b443cbdb13/patches
 2017-01-31 19:21:25 +01:00
Joachim Schöberl
52517218c9 Merge branch 'elofpoint-tol' into 'master' 
Use tolerance in GetElementOfPoint when using a search tree

I'm getting artifacts at domain edges (see attached), because no tolerance is used when calling `elementsearchtree->GetIntersecting()` inside `GetElementOfPoint`.

![searchtree](/uploads/5aa10da74cac7bef9e134756ea897e49/searchtree.png)

See merge request !29
 2017-01-25 21:25:52 +01:00
Matthias Hochsteger
4cff6b546a install all headers to INCDIR 2017-01-16 14:59:57 +01:00
Alexander Schlüter
60768cf9c5 use tolerance in GetElementOfPoint when using a search tree 2017-01-12 21:09:07 +01:00
Matthias Hochsteger
190d035809 Fix Python paths 2017-01-09 18:45:12 +01:00
Joachim Schöberl
f44a32e4de Merge branch 'pointoutofquad' into 'master' 
point out of quad fix

Now the error "point out of domain" does not appear any more, but the values are wrong. [pointoutofquad.py](/uploads/91e142ab369491ac5a4e4a8d9c93d671/pointoutofquad.py)

See merge request !28
 2017-01-06 22:16:53 +01:00
Joachim Schöberl
d1de4a7cf9 Introduce NetgenGeometry base class to Python. export meshing first, then csg 2017-01-05 05:08:24 +01:00
Michael Neunteufel
3e9ad94307 point out of quad fix 2017-01-02 11:06:36 +01:00
Joachim Schöberl
9790774b49 change to SurfaceElementIndex 2016-12-15 13:05:34 +01:00