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461 Commits

Author SHA1 Message Date
Joachim Schoeberl
4565c8ef79 rvalue Array+= allows for Array<int>({1,2,3})+={4,5} 2022-04-02 10:37:26 +02:00
Joachim Schoeberl
409c460d2f fix non-default SIMD-size 2022-04-02 10:37:26 +02:00
luz paz
4033fac1b3 Fix various typos 
Found via `codespell -q 3 -S ./external_dependencies/pybind11 -L alledges,allright,ane,anormal,ans,apoints,ba,boxs,cancle,childs,co-ordinate,co-ordinates,daty,enty,filld,hel,identifyable,ist,linz,lod,ned,nd,selt,statics,suround,thev,thist,thisy,timere,upto,wel`
 2022-03-25 18:22:05 -04:00
mhochsteger@cerbsim.com
54dde2a10f fix PajeTrace context manager 2022-03-21 22:12:21 +01:00
Joachim Schoeberl
4bad16744b wrapper for mpi-gather to ngscore 2022-03-18 08:20:20 +01:00
mhochsteger@cerbsim.com
94bd713310 Merge remote-tracking branch 'stefanbruens/fix_aarch64_uint_mask' 2022-03-16 10:27:43 +01:00
mhochsteger@cerbsim.com
2136269175 Link libstdc++fs when compiling with gcc 8 2022-03-14 18:10:47 +01:00
Joachim Schoeberl
c4b679ec5a fix AllReduce (array) 2022-03-05 12:21:28 +01:00
Joachim Schoeberl
2b9d4596ae AllReduce for Arrays 2022-03-05 11:42:00 +01:00
mhochsteger@cerbsim.com
4e8fe77098 fix some warnings 2022-03-02 14:14:38 +01:00
mhochsteger@cerbsim.com
fe838fbd75 fix ToLower() 2022-02-23 19:16:30 +01:00
mhochsteger@cerbsim.com
cf59f297a7 use std::filesystem::path 2022-02-23 11:56:00 +01:00
mhochsteger@cerbsim.com
eceb83171f allow implicit conversion from py::list to Array<> 2022-02-21 12:02:30 +01:00
mhochsteger@cerbsim.com
d3e0ae6fd7 use ngcore pybind list caster only for non-numpy types 
we should Array<T> for all numpy dtypes T
 2022-02-21 11:18:19 +01:00
mhochsteger@cerbsim.com
17e845df29 fix rpath of pyngcore 2022-02-16 09:44:00 +01:00
Matthias Hochsteger
d2378d9781 pyngcore as package (staying backward compatible) 2022-02-16 09:27:02 +01:00
Joachim Schoeberl
67c031cb77 fix unused-variable warning 2022-02-11 15:08:59 +01:00
Joachim Schoeberl
79ff65d224 added SIMD-wrapper for 'erf' 2022-02-11 13:56:28 +01:00
Joachim Schoeberl
1222356cf4 HSum(4) for M1, FlatArray!= 2022-02-04 17:01:31 +01:00
Stefan Brüns
5fce0b48b8 Fix signedness for ARM Neon mask type 
vbslq_f64 and vandq_u64 both require uint64x2_t types as mask arguments,
and the Neon intrinsics do not allow for implicit conversion.

Fixes build errors with current GCC 11.2.1:

/home/abuild/rpmbuild/BUILD/netgen-6.2.2105/libsrc/core/simd_arm64.hpp:171:29: error: cannot convert '__Int64x2_t' to 'uint64x2_t'
 171 |     return vandq_u64 (a.Data(), b.Data());
 2022-01-27 14:16:51 +01:00
Joachim Schoeberl
44d626f727 BitArray indexing from the end 2021-12-29 21:06:52 +01:00
mhochsteger@cerbsim.com
f95332d0a1 archive optional<T> 2021-11-10 18:36:55 +01:00
mhochsteger@cerbsim.com
b258d7bd65 fix path to string conversion 2021-11-04 13:00:30 +01:00
mhochsteger@cerbsim.com
747367ab8a util function GetTempFilename() 2021-11-04 12:20:56 +01:00
mhochsteger@cerbsim.com
f0e7f843c3 util functions to get compile-time simd size and range check settings 2021-10-28 13:47:58 +02:00
mhochsteger@cerbsim.com
d9e8b815f5 pip installer 2021-10-27 16:51:41 +02:00
Christopher Lackner
a8da814c19 remove debug output 2021-09-28 22:51:06 +02:00
Christopher Lackner
bd29763b16 Add std::any to py::object caster for archive registered types 2021-09-28 22:34:11 +02:00
Joachim Schoeberl
968658a70e too much tracing for recursive tasks ? 2021-09-28 15:41:46 +02:00
Christopher Lackner
2b7347ce07 Export Flags.ToDict to python 2021-09-28 14:05:33 +02:00
mhochsteger@cerbsim.com
e1d71a78ab no need to remove archive type infos 2021-09-13 17:18:32 +02:00
Joachim Schoeberl
5a82e18ed1 default msg-level to 0 2021-09-06 17:36:53 +02:00
Joachim Schoeberl
77f07f8baf occ output control 2021-09-06 16:59:48 +02:00
Matthias Hochsteger
42faaacdb7 fix gcc build error 2021-09-03 13:12:23 +02:00
Matthias Hochsteger
6a26125889 Consistent Demangle on MSVC and gcc/clang 
Use regex list from here:
https://github.com/RobotLocomotion/drake/blob/master/common/nice_type_name.cc
 2021-09-01 16:56:01 +02:00
Matthias Hochsteger
48198d232d Revert "Revert "Merge branch 'parallel_meshing' into 'master'"" 
This reverts commit 65c5e2d244.
 2021-07-19 14:59:12 +02:00
Christopher Lackner
300835a446 fix table archive 2021-07-17 13:35:01 +02:00
Christopher Lackner
6f044faaba archive Table 2021-07-17 12:48:59 +02:00
Matthias Hochsteger
65c5e2d244 Revert "Merge branch 'parallel_meshing' into 'master'" 
This reverts commit d20a297cf1, reversing
changes made to fd50131a5b.
 2021-06-29 19:38:19 +02:00
Matthias Hochsteger
55ab122f35 Merge remote-tracking branch 'origin/master' into parallel_meshing 2021-06-28 12:10:08 +02:00
Joachim Schoeberl
fd50131a5b constexpr function 2021-06-28 01:35:23 +02:00
Joachim Schoeberl
91506aa71a static constexpr 2021-06-28 01:07:03 +02:00
Joachim Schoeberl
31d5ce8be9 packed archiving 2021-06-27 12:32:51 +02:00
Joachim Schoeberl
54db7941d0 tuning mesh(un)pickling 2021-06-26 12:14:17 +02:00
Joachim Schoeberl
e84d4e90c8 add header for std::byte 2021-06-25 18:58:25 +02:00
Matthias Hochsteger
34629749d6 Merge remote-tracking branch 'origin/master' into parallel_meshing 2021-06-25 17:32:16 +02:00
Joachim Schoeberl
72fb819def missing overloads for archive (byte) 2021-06-24 13:21:43 +02:00
Joachim Schoeberl
971d6bb465 little tuning of mesh pickling 2021-06-24 07:39:09 +02:00
Matthias Hochsteger
8be5b7d810 Merge remote-tracking branch 'origin/master' into parallel_meshing 2021-06-22 11:46:36 +02:00
Matthias Hochsteger
4b40a7eb31 backward-compatible Timer interface 2021-06-14 14:55:08 +02:00
Matthias Hochsteger
c835767115 Timer in ProcessTask() 2021-06-14 10:39:57 +02:00
Matthias Hochsteger
1de1a1800e Fix template argument deduction for Timer, remove ThreadRegionTimer 2021-06-11 15:19:30 +02:00
Matthias Hochsteger
6f7543c7dc Timer - convenience constructors to disable tracing and/or timing 
Examples:
Timer t0("name");
Timer t1("name", NoTracing);
Timer t2("name", NoTiming);
Timer t3("name", NoTracing, NoTiming);
Timer t4("name", NoTiming, NoTracing);
 2021-06-11 10:08:06 +02:00
Matthias Hochsteger
c5639a5706 Thread-safe Timer 
- use template arguments instead of run-time variable 'priority'
 - change in paje interface for tracing
 2021-06-11 09:52:58 +02:00
Matthias Hochsteger
a11294baf0 inline GetThreadI() (except on Windows, no dllexport for thread_local variables supported) 2021-06-11 09:51:23 +02:00
Matthias Hochsteger
a96a1e4624 separate memtracer.hpp 2021-06-10 09:38:00 +02:00
Joachim Schoeberl
abb2e43ccb optimize parallel load 2021-06-08 19:08:14 +02:00
Matthias Hochsteger
3ce5b1958e Initialize FlatArray members ( thx @mrambausek ) 2021-06-02 15:45:36 +02:00
Joachim Schoeberl
6dcc89ad04 some table py-features 2021-06-01 12:57:58 +02:00
Joachim Schoeberl
7c4f1cf53a minimal export of Table 2021-05-30 22:15:21 +02:00
Joachim Schoeberl
c3984fcc5b just use pointer for Array - iterators (on proposal of Matthias R) 2021-05-30 18:58:34 +02:00
Joachim Schoeberl
3258b27410 fix initialization order warning 2021-05-30 18:57:14 +02:00
Matthias Hochsteger
db494f4239 more Timers in Mesh 2021-05-12 10:56:21 +02:00
Matthias Hochsteger
4b53c63fba helper functions for table creation 2021-05-10 12:03:20 +02:00
Matthias Hochsteger
acf2b39680 Fix cross-platform archiving 
This is a non-backward compatible change for archives on Windows!
 2021-04-23 20:06:58 +02:00
Joachim Schoeberl
2d9e32ba70 ArrayMem from BaseArray ctor 2021-04-09 21:30:29 +02:00
Christopher Lackner
daa0985a41 trace memory free only when array owns memory 2021-04-07 09:58:53 +02:00
Christopher Lackner
4fad6e0631 fix pickling on arm, store long type platform independent 2021-04-01 10:48:13 +02:00
Joachim Schoeberl
1f45601387 Array<int> ia(n); ia.Range(2, END-1) 2021-03-29 22:39:57 +02:00
Christopher Lackner
001eaa32b6 DoArchive for LocalH 2021-03-29 13:55:23 +02:00
Stefan Brüns
85e8c09ff6 Fix GetTimeCounter for Aarch64 variants 
Neither GCC nor Clang define an __arm64__ preprocessor macro, but use
__aarch64__ (MSVC uses _MARM_64). Add a "64" suffix to the define, i.e.
NETGEN_ARCH_ARM64 to make it more obvious in only refers to aarch64, and
to be in line with NETGEN_ARCH_AMD64.

Replace the (Clang specific) __builtin_readcyclecounter with inline
asm:
- The function return cycles (i.e. varies with CPU frequency), not time
- It may return 0, depending on the PMU settings
- It may cause an illegal instruction, in case it is not trapped by the
  kernel, e.g. on FreeBSD.

Reading the generic timer/counter CNTVCT_EL0 instead of PMCCNTR_EL0 avoids
these pitfalls. The inline asm works on GCC and Clang, instead of
Clang only for the builtin.
 2021-03-03 17:30:33 +01:00
Joachim Schoeberl
979a695f62 fixing warnings 2021-02-18 10:30:01 +01:00
Joachim Schoeberl
87e472b6fc start face-hierarchy in Netgen 2021-02-17 14:54:14 +01:00
Christopher Lackner
0c2430f3dc add std::any symboltable to Flags to store arbitrary objects 2021-02-08 15:44:15 +01:00
Joachim Schoeberl
25011c8407 arm-simd: HSum, tuple support 2021-02-05 11:59:03 +01:00
Joachim Schöberl
9a9828d3af some more arm-simds 2021-01-31 16:31:47 +01:00
Joachim Schöberl
18f5a933a9 arm-simd working 2021-01-30 21:02:49 +01:00
Joachim Schöberl
f53c069308 prepare SIMD for arm64 2021-01-30 20:05:28 +01:00
Joachim Schöberl
ea7f6c1e94 fnma intrinsic for avx512 2020-12-22 13:06:08 +01:00
Joachim Schöberl
c1c10174be FNMA asm-instruction 2020-12-22 09:37:21 +01:00
Matthias Hochsteger
94ecf8de92 Fix private linking of Python 
The CMake export of Interface libraries also exports PRIVATE build
settings, which leads to build errors with non-existing include paths and .lib files for binary distributions.

Use the work-around mentioned here to circumvent this behavior:
https://gitlab.kitware.com/cmake/cmake/-/issues/15415#note_849405
 2020-12-18 11:05:10 +01:00
Joachim Schöberl
d30accdc1a Merge branch 'apple_silicon' into 'master' 
Support for Apple M1

See merge request jschoeberl/netgen!359
 2020-12-16 20:47:21 +00:00
Matthias Hochsteger
eb6ac164e7 int64_t for masks 2020-12-16 21:00:12 +01:00
Matthias Hochsteger
d97a9a6594 Alignment for generic SIMD classes 2020-12-16 17:20:18 +01:00
Matthias Hochsteger
e68d8cea9b workaround for missing intrinsic on GCC 7 2020-12-16 10:58:01 +01:00
Matthias Hochsteger
9c0dbec8c9 Fix SIMD<mask64> ctor and Unpack 2020-12-15 15:31:17 +01:00
Matthias Hochsteger
dbe894fea3 Support for Apple M1 2020-12-15 10:43:11 +01:00
Matthias Hochsteger
1b55c51da5 remove AlignedAlloc, use alignas 2020-12-15 09:40:43 +01:00
Matthias Hochsteger
1f3aebcec0 Fix AVX-Operators for int64_t simd (use generic ones) 2020-12-15 09:40:43 +01:00
mhochsteger
f213a7a5b1 fix fabs for AVX on Windows 2020-12-14 15:50:27 +01:00
Matthias Hochsteger
248145bbf0 fix wrong simd operators 2020-12-14 12:47:53 +01:00
Matthias Hochsteger
fc44eb95df simd - array and variadic ctor 2020-12-11 23:12:34 +01:00
Matthias Hochsteger
2d667a08dc move (refactored) SIMD headers from ngsolve into ngcore 2020-12-11 20:54:41 +01:00
Christopher Lackner
cb0d8295bf fix hashing of bitarray (uninitialized value in HashArchive & random 
values at end)
 2020-11-25 22:07:07 +01:00
Matthias Hochsteger
91f127ef71 memory tracer - fix memory accumulation of children 2020-11-25 14:34:29 +01:00
Matthias Hochsteger
b55264e0ee memory tracing - handle multiple consecutive tracers correctly 2020-11-24 19:20:21 +01:00
Matthias Hochsteger
efdc57885a memory tracing - store parents array instead of children table 2020-11-24 17:12:39 +01:00
Christopher Lackner
922ad16213 if more memory is deallocated than allocated set memtracer to 0 not 
negative values
 2020-11-21 22:32:41 +01:00
Christopher Lackner
a69cdc9000 mem tracing compile time option, simplify by MemoryTracer as member 2020-11-21 15:49:07 +01:00
Matthias Hochsteger
87623981a6 export PajeTrace.WriteMemoryChart() to python 2020-11-19 19:29:04 +01:00
Matthias Hochsteger
f0152baacf mem tracing - TraceMemorySwap helper function 2020-11-19 17:35:29 +01:00
Matthias Hochsteger
6f98123e98 mem tracing - use topological sorting, some fixes 2020-11-19 16:16:39 +01:00
Matthias Hochsteger
a17066a387 html chart for peak memory consumption, some Array tracing fixes 2020-11-19 14:57:45 +01:00
Matthias Hochsteger
f143995f27 clean up memory tracing 2020-11-18 21:45:00 +01:00
Matthias Hochsteger
1a93fb3fa5 first attempt on memory tracing 2020-11-18 20:20:35 +01:00
Joachim Schöberl
cddfb4a0b5 fixing delaunay2d point search, non-parallel for small meshes 2020-10-26 11:20:12 +01:00
Joachim Schöberl
bfbef51996 remove bitarray in delaunay2d, just one hashtable position 2020-10-23 19:40:47 +02:00
Matthias Hochsteger
832485e41a pybind11 compatibility 2020-10-22 12:11:19 +02:00
Matthias Hochsteger
b3d757ccd1 update pybind11 to 2.6.0rc3 2020-10-17 17:58:38 +02:00
Matthias Hochsteger
6544fbeca6 sunburst chart - tooltip formatting 2020-10-14 11:52:34 +02:00
Matthias Hochsteger
14e6a1d24b more statistics in sunburst chart 2020-10-14 11:52:26 +02:00
Matthias Hochsteger
25efdadd05 helper macro for Timer/RegionTimer definition 2020-10-13 11:11:33 +02:00
Joachim Schöberl
b5a9580a8e BitArray::Data 2020-10-08 21:27:16 +02:00
Matthias Hochsteger
2629208f38 pajetrace - fix Timer names in MPI-trace 2020-10-08 12:20:46 +02:00
Matthias Hochsteger
7a1344bfcb cmake variable NG_COMPILE_FLAGS to set additional compile options 2020-10-01 13:35:53 +02:00
Christopher Lackner
1666155d25 add range adaptors (filter, transform) 2020-09-19 17:39:03 +02:00
Joachim Schöberl
283db5c637 trange bracket with size_t for T_Range 2020-09-19 09:43:00 +02:00
Joachim Schöberl
8b5675a8e2 check if mpi is initialized 2020-09-15 23:16:04 +02:00
Christopher Lackner
c7af26771e fix bug in BitArray== 2020-09-11 16:54:25 +02:00
Joachim Schöberl
65761e7768 check copy_assignable also in copy-constructor 2020-09-09 07:03:12 +02:00
Joachim Schöberl
98697959dd check for copy_assignable 2020-09-09 06:31:03 +02:00
Joachim Schöberl
b2b8a15611 Array copy only if type is assignable 2020-09-08 23:00:03 +02:00
Joachim Schöberl
a45cbd6f84 parallel pickling per default on 2020-09-04 14:47:56 +02:00
Christopher Lackner
a8062a6f36 fix missing initial value for offset in HashArchive 2020-09-01 11:59:37 +02:00
Christopher Lackner
deab89adf8 add missing NGCORE_API and HashArchive & with const value 2020-08-29 16:19:45 +02:00
Christopher Lackner
55971b3dde HashArchive 2020-08-29 15:38:03 +02:00
Christopher Lackner
f45fbfd811 operator== and better archive for BitArray 2020-08-29 15:37:48 +02:00
Joachim Schöberl
020dd4373d DynamicTable: char-alloc if not trivially constructable 2020-08-29 12:36:45 +02:00
Joachim Schöberl
8840c519d3 Min/Max of FlatArray, DynamicTable::ChangeSize 2020-08-29 11:04:47 +02:00
Joachim Schöberl
73846f23ae remove BaseDynamicTable, everything in template class 2020-08-29 09:58:33 +02:00
Joachim Schöberl
f8dd4be8d6 modernize ParallelTopology 2020-08-29 09:36:46 +02:00
Joachim Schöberl
9968037361 move semantics to table, PNums to LineSegments 2020-08-28 08:47:33 +02:00
Joachim Schöberl
5863136285 MaybeTrue/False for xbool 2020-08-23 18:47:49 +02:00
Matthias Hochsteger
334faad054 pybind11 - automatic conversion of python list to Array<> 2020-08-20 18:25:06 +02:00
Joachim Schöberl
5e09626466 parallel pickling with mesh-merging 2020-08-19 14:50:11 +02:00
Joachim Schöberl
9e105c48ea mpi-wrapper 2020-08-17 20:28:00 +02:00
Joachim Schöberl
33626c6669 clear solutiondata object on python-exit 2020-08-17 15:55:32 +02:00
Matthias Hochsteger
72447a51d5 Fix paje trace with MPI and TaskManager 2020-08-10 12:20:17 +02:00
Matthias Hochsteger
87c2901e32 Disable paje trace thread counter by default (halves trace file size) 2020-08-07 15:44:21 +02:00
Matthias Hochsteger
b272614a51 export PajeTrace to Python (with context manager api) 2020-08-07 15:43:52 +02:00
Matthias Hochsteger
f9ff1db7c3 let MPI rank 1 write paje trace file (more timers than rank0) 2020-08-07 15:34:21 +02:00
Matthias Hochsteger
acfe9bb606 Merge traces with MPI 2020-08-07 12:59:22 +02:00
Joachim Schöberl
2e39d07cc8 mpi constants for non-mpi 2020-08-05 18:05:31 +02:00
Joachim Schöberl
3c8f1877c9 more mpi calls from ngcore 2020-08-05 01:11:26 +02:00
Joachim Schöberl
254257d406 timer in MPI wrappes 2020-08-04 16:30:08 +02:00
Matthias Hochsteger
4682e6915c remove FlatArray for C-Array, use ArrayMem 2020-08-04 12:59:03 +02:00
Joachim Schöberl
698192ed72 FlatArray for C-array 2020-08-03 14:45:32 +02:00
Joachim Schöberl
94bed40761 modernize parallelmesh (Array, mpi_wrapper) 2020-08-03 00:44:28 +02:00
Joachim Schöberl
c0909d69c2 no valid MPI-comm in sequential mode 2020-08-02 11:33:11 +02:00
Joachim Schöberl
ba84439227 NgMPI_Communicator by reference, check for valid mpi-comm 2020-08-02 09:25:44 +02:00