#ifdef NG_PYTHON #include <../general/ngpython.hpp> #include #include "python_mesh.hpp" #include #include "meshing.hpp" // #include // #include #include <../interface/writeuser.hpp> using namespace netgen; extern const char *ngscript[]; namespace netgen { extern bool netgen_executable_started; extern shared_ptr ng_geometry; extern void Optimize2d (Mesh & mesh, MeshingParameters & mp); #ifdef PARALLEL /** we need allreduce in python-wrapped communicators **/ template inline T MyMPI_AllReduceNG (T d, const MPI_Op & op /* = MPI_SUM */, MPI_Comm comm) { T global_d; MPI_Allreduce ( &d, &global_d, 1, MyGetMPIType(), op, comm); return global_d; } #else // enum { MPI_SUM = 0, MPI_MIN = 1, MPI_MAX = 2 }; // typedef int MPI_Op; template inline T MyMPI_AllReduceNG (T d, const MPI_Op & op /* = MPI_SUM */, MPI_Comm comm) { return d; } #endif } void TranslateException (const NgException & ex) { string err = string("Netgen exception: ")+ex.What(); PyErr_SetString(PyExc_RuntimeError, err.c_str()); } static Transformation<3> global_trafo(Vec<3> (0,0,0)); DLL_HEADER void ExportNetgenMeshing(py::module &m) { py::register_exception(m, "NgException"); m.attr("_netgen_executable_started") = py::cast(netgen::netgen_executable_started); string script; const char ** hcp = ngscript; while (*hcp) script += *hcp++; m.attr("_ngscript") = py::cast(script); m.def("_GetStatus", []() { MyStr s; double percent; GetStatus(s, percent); return py::make_tuple(s.c_str(), percent); }); m.def("_PushStatus", [](string s) { PushStatus(MyStr(s)); }); m.def("_SetThreadPercentage", [](double percent) { SetThreadPercent(percent); }); py::class_ (m, "MPI_Comm") .def_property_readonly ("rank", &NgMPI_Comm::Rank) .def_property_readonly ("size", &NgMPI_Comm::Size) .def("Barrier", &NgMPI_Comm::Barrier) #ifdef PARALLEL .def("WTime", [](NgMPI_Comm & c) { return MPI_Wtime(); }) #else .def("WTime", [](NgMPI_Comm & c) { return -1.0; }) #endif .def("Sum", [](NgMPI_Comm & c, double x) { return MyMPI_AllReduceNG(x, MPI_SUM, c); }) .def("Min", [](NgMPI_Comm & c, double x) { return MyMPI_AllReduceNG(x, MPI_MIN, c); }) .def("Max", [](NgMPI_Comm & c, double x) { return MyMPI_AllReduceNG(x, MPI_MAX, c); }) .def("Sum", [](NgMPI_Comm & c, int x) { return MyMPI_AllReduceNG(x, MPI_SUM, c); }) .def("Min", [](NgMPI_Comm & c, int x) { return MyMPI_AllReduceNG(x, MPI_MIN, c); }) .def("Max", [](NgMPI_Comm & c, int x) { return MyMPI_AllReduceNG(x, MPI_MAX, c); }) .def("Sum", [](NgMPI_Comm & c, size_t x) { return MyMPI_AllReduceNG(x, MPI_SUM, c); }) .def("Min", [](NgMPI_Comm & c, size_t x) { return MyMPI_AllReduceNG(x, MPI_MIN, c); }) .def("Max", [](NgMPI_Comm & c, size_t x) { return MyMPI_AllReduceNG(x, MPI_MAX, c); }) .def("SubComm", [](NgMPI_Comm & c, std::vector proc_list) { Array procs(proc_list.size()); for (int i = 0; i < procs.Size(); i++) { procs[i] = proc_list[i]; } if (!procs.Contains(c.Rank())) { throw Exception("rank "+ToString(c.Rank())+" not in subcomm"); } return c.SubCommunicator(procs); }, py::arg("procs")); ; py::class_(m, "NGDummyArgument") .def("__bool__", []( NGDummyArgument &self ) { return false; } ) ; py::class_> (m, "Point2d") .def(py::init()) .def ("__str__", &ToString>) .def(py::self-py::self) .def(py::self+Vec<2>()) .def(py::self-Vec<2>()) .def("__getitem__", [](Point<2>& self, int index) { return self[index]; }) ; py::class_> (m, "Point3d") .def(py::init()) .def ("__str__", &ToString>) .def(py::self-py::self) .def(py::self+Vec<3>()) .def(py::self-Vec<3>()) .def("__getitem__", [](Point<2>& self, int index) { return self[index]; }) ; m.def ("Pnt", FunctionPointer ([](double x, double y, double z) { return global_trafo(Point<3>(x,y,z)); })); m.def ("Pnt", FunctionPointer ([](double x, double y) { return Point<2>(x,y); })); /* // duplicated functions ???? m.def ("Pnt", FunctionPointer ([](double x, double y, double z) { return Point<3>(x,y,z); })); m.def ("Pnt", FunctionPointer ([](double x, double y) { return Point<2>(x,y); })); */ py::class_> (m, "Vec2d") .def(py::init()) .def ("__str__", &ToString>) .def(py::self+py::self) .def(py::self-py::self) .def(-py::self) .def(double()*py::self) .def("Norm", &Vec<2>::Length) .def("__getitem__", [](Vec<2>& vec, int index) { return vec[index]; }) .def("__len__", [](Vec<2>& /*unused*/) { return 2; }) ; py::class_> (m, "Vec3d") .def(py::init()) .def ("__str__", &ToString>) .def(py::self+py::self) .def(py::self-py::self) .def(-py::self) .def(double()*py::self) .def("Norm", &Vec<3>::Length) .def("__getitem__", [](Vec<3>& vec, int index) { return vec[index]; }) .def("__len__", [](Vec<3>& /*unused*/) { return 3; }) ; m.def ("Vec", FunctionPointer ([] (double x, double y, double z) { return global_trafo(Vec<3>(x,y,z)); })); m.def ("Vec", FunctionPointer ([] (double x, double y) { return Vec<2>(x,y); })); py::class_> (m, "Trafo") .def(py::init>(), "a translation") .def(py::init,Vec<3>,double>(), "a rotation given by point on axes, direction of axes, angle") .def("__mul__", [](Transformation<3> a, Transformation<3> b)->Transformation<3> { Transformation<3> res; res.Combine(a,b); return res; }) .def("__call__", [] (Transformation<3> trafo, Point<3> p) { return trafo(p); }) ; m.def ("GetTransformation", [] () { return global_trafo; }); m.def ("SetTransformation", [] (Transformation<3> trafo) { global_trafo = trafo; }); m.def ("SetTransformation", [](int dir, double angle) { if (dir > 0) global_trafo.SetAxisRotation (dir, angle*M_PI/180); else global_trafo = Transformation<3> (Vec<3>(0,0,0)); }, py::arg("dir")=int(0), py::arg("angle")=int(0)); m.def ("SetTransformation", [](Point<3> p0, Vec<3> ex, Vec<3> ey, Vec<3> ez) { Point<3> pnts[4]; pnts[0] = p0; pnts[1] = p0 + ex; pnts[2] = p0 + ey; pnts[3] = p0 + ez; global_trafo = Transformation<3> (pnts); }, py::arg("p0"), py::arg("ex"), py::arg("ey"), py::arg("ez")); py::class_(m, "PointId") .def(py::init()) .def("__repr__", &ToString) .def("__str__", &ToString) .def_property_readonly("nr", &PointIndex::operator int) .def("__eq__" , FunctionPointer( [](PointIndex &self, PointIndex &other) { return static_cast(self)==static_cast(other); }) ) .def("__hash__" , FunctionPointer( [](PointIndex &self ) { return static_cast(self); }) ) ; py::class_(m, "ElementId3D") .def(py::init()) .def("__repr__", &ToString) .def("__str__", &ToString) .def_property_readonly("nr", &ElementIndex::operator int) .def("__eq__" , FunctionPointer( [](ElementIndex &self, ElementIndex &other) { return static_cast(self)==static_cast(other); }) ) .def("__hash__" , FunctionPointer( [](ElementIndex &self ) { return static_cast(self); }) ) ; py::class_(m, "ElementId2D") .def(py::init()) .def("__repr__", &ToString) .def("__str__", &ToString) .def_property_readonly("nr", &SurfaceElementIndex::operator int) .def("__eq__" , FunctionPointer( [](SurfaceElementIndex &self, SurfaceElementIndex &other) { return static_cast(self)==static_cast(other); }) ) .def("__hash__" , FunctionPointer( [](SurfaceElementIndex &self ) { return static_cast(self); }) ) ; py::class_(m, "ElementId1D") .def(py::init()) .def("__repr__", &ToString) .def("__str__", &ToString) .def_property_readonly("nr", &SegmentIndex::operator int) .def("__eq__" , FunctionPointer( [](SegmentIndex &self, SegmentIndex &other) { return static_cast(self)==static_cast(other); }) ) .def("__hash__" , FunctionPointer( [](SegmentIndex &self ) { return static_cast(self); }) ) ; /* py::class_> ("Point") .def(py::init()) ; */ py::class_> */ >(m, "MeshPoint") .def(py::init>()) .def("__str__", &ToString) .def("__repr__", &ToString) .def_property_readonly("p", [](const MeshPoint & self) { py::list l; l.append ( py::cast(self[0]) ); l.append ( py::cast(self[1]) ); l.append ( py::cast(self[2]) ); return py::tuple(l); }) .def("__getitem__", [](const MeshPoint & self, int index) { if(index<0 || index>2) throw py::index_error(); return self[index]; }) .def("__setitem__", [](MeshPoint & self, int index, double val) { if(index<0 || index>2) throw py::index_error(); self(index) = val; }) ; py::class_(m, "Element3D") .def(py::init([](int index, std::vector vertices) { int np = vertices.size(); ELEMENT_TYPE et; switch (np) { case 4: et = TET; break; case 5: et = PYRAMID; break; case 6: et = PRISM; break; case 8: et = HEX; break; case 10: et = TET10; break; case 13: et = PYRAMID13; break; case 15: et = PRISM15; break; case 20: et = HEX20; break; default: throw Exception ("no Element3D with " + ToString(np) + " points"); } auto newel = new Element(et); for(int i=0; iSetIndex(index); return newel; }), py::arg("index")=1,py::arg("vertices"), "create volume element" ) .def("__repr__", &ToString) .def_property("index", &Element::GetIndex, &Element::SetIndex) .def_property("curved", &Element::IsCurved, &Element::SetCurved) .def_property_readonly("vertices", FunctionPointer ([](const Element & self) -> py::list { py::list li; for (int i = 0; i < self.GetNV(); i++) li.append (py::cast(self[i])); return li; })) .def_property_readonly("points", FunctionPointer ([](const Element & self) -> py::list { py::list li; for (int i = 0; i < self.GetNP(); i++) li.append (py::cast(self[i])); return li; })) ; py::class_(m, "Element2D") .def(py::init ([](int index, py::list vertices) { Element2d * newel = nullptr; if (py::len(vertices) == 3) { newel = new Element2d(TRIG); for (int i = 0; i < 3; i++) (*newel)[i] = py::extract(vertices[i])(); newel->SetIndex(index); } else if (py::len(vertices) == 4) { newel = new Element2d(QUAD); for (int i = 0; i < 4; i++) (*newel)[i] = py::extract(vertices[i])(); newel->SetIndex(index); } else if (py::len(vertices) == 6) { newel = new Element2d(TRIG6); for(int i = 0; i<6; i++) (*newel)[i] = py::extract(vertices[i])(); newel->SetIndex(index); } else if (py::len(vertices) == 8) { newel = new Element2d(QUAD8); for(int i = 0; i<8; i++) (*newel)[i] = py::extract(vertices[i])(); newel->SetIndex(index); } else throw NgException("Inconsistent number of vertices in Element2D"); return newel; }), py::arg("index")=1,py::arg("vertices"), "create surface element" ) .def_property("index", &Element2d::GetIndex, &Element2d::SetIndex) .def_property("curved", &Element2d::IsCurved, &Element2d::SetCurved) .def_property_readonly("vertices", FunctionPointer([](const Element2d & self) -> py::list { py::list li; for (int i = 0; i < self.GetNV(); i++) li.append(py::cast(self[i])); return li; })) .def_property_readonly("points", FunctionPointer ([](const Element2d & self) -> py::list { py::list li; for (int i = 0; i < self.GetNP(); i++) li.append (py::cast(self[i])); return li; })) ; py::class_(m, "Element1D") .def(py::init([](py::list vertices, py::list surfaces, int index, int edgenr) { Segment * newel = new Segment(); for (int i = 0; i < 2; i++) (*newel)[i] = py::extract(vertices[i])(); newel -> si = index; newel -> edgenr = edgenr; newel -> epgeominfo[0].edgenr = edgenr; newel -> epgeominfo[1].edgenr = edgenr; // needed for codim2 in 3d newel -> edgenr = index; if (len(surfaces)) { newel->surfnr1 = py::extract(surfaces[0])(); newel->surfnr2 = py::extract(surfaces[1])(); } return newel; }), py::arg("vertices"), py::arg("surfaces")=py::list(), py::arg("index")=1, py::arg("edgenr")=1, "create segment element" ) .def("__repr__", &ToString) .def_property_readonly("vertices", FunctionPointer ([](const Segment & self) -> py::list { py::list li; for (int i = 0; i < 2; i++) li.append (py::cast(self[i])); return li; })) .def_property_readonly("points", FunctionPointer ([](const Segment & self) -> py::list { py::list li; for (int i = 0; i < self.GetNP(); i++) li.append (py::cast(self[i])); return li; })) .def_property_readonly("surfaces", FunctionPointer ([](const Segment & self) -> py::list { py::list li; li.append (py::cast(self.surfnr1)); li.append (py::cast(self.surfnr2)); return li; })) .def_property_readonly("index", FunctionPointer([](const Segment &self) -> size_t { return self.si; })) .def_property_readonly("edgenr", FunctionPointer([](const Segment & self) -> size_t { return self.edgenr; })) ; py::class_(m, "Element0D") .def(py::init([](PointIndex vertex, int index) { Element0d * instance = new Element0d; instance->pnum = vertex; instance->index = index; return instance; }), py::arg("vertex"), py::arg("index")=1, "create point element" ) .def("__repr__", &ToString) .def_property_readonly("vertices", FunctionPointer ([](const Element0d & self) -> py::list { py::list li; li.append (py::cast(self.pnum)); return li; })) ; py::class_(m, "FaceDescriptor") .def(py::init()) .def(py::init([](int surfnr, int domin, int domout, int bc) { FaceDescriptor * instance = new FaceDescriptor(); instance->SetSurfNr(surfnr); instance->SetDomainIn(domin); instance->SetDomainOut(domout); instance->SetBCProperty(bc); return instance; }), py::arg("surfnr")=1, py::arg("domin")=1, py::arg("domout")=py::int_(0), py::arg("bc")=py::int_(0), "create facedescriptor") .def("__str__", &ToString) .def("__repr__", &ToString) .def_property("surfnr", &FaceDescriptor::SurfNr, &FaceDescriptor::SetSurfNr) .def_property("domin", &FaceDescriptor::DomainIn, &FaceDescriptor::SetDomainIn) .def_property("domout", &FaceDescriptor::DomainOut, &FaceDescriptor::SetDomainOut) .def_property("bc", &FaceDescriptor::BCProperty, &FaceDescriptor::SetBCProperty) .def_property("bcname", [](FaceDescriptor & self) -> string { return self.GetBCName(); }, [](FaceDescriptor & self, string name) { self.SetBCName(new string(name)); } // memleak ) .def("SetSurfaceColor", [](FaceDescriptor & self, py::list color ) { Vec3d c; c.X() = py::extract(color[0])(); c.Y() = py::extract(color[1])(); c.Z() = py::extract(color[2])(); self.SetSurfColour(c); }) ; ExportArray(m); ExportArray(m); ExportArray(m); ExportArray(m); ExportArray(m); ExportArray(m); py::implicitly_convertible< int, PointIndex>(); py::class_> (m, "NetgenGeometry", py::dynamic_attr()) ; py::class_>(m, "Mesh") // .def(py::init<>("create empty mesh")) .def(py::init( [] (int dim, NgMPI_Comm comm) { auto mesh = make_shared(); mesh->SetCommunicator(comm); mesh -> SetDimension(dim); SetGlobalMesh(mesh); // for visualization mesh -> SetGeometry (nullptr); return mesh; } ), py::arg("dim")=3, py::arg("comm")=NgMPI_Comm{} ) .def(NGSPickle()) .def_property_readonly("comm", [](const Mesh & amesh) -> NgMPI_Comm { return amesh.GetCommunicator(); }, "MPI-communicator the Mesh lives in") /* .def("__init__", [](Mesh *instance, int dim) { new (instance) Mesh(); instance->SetDimension(dim); }, py::arg("dim")=3 ) */ .def_property_readonly("_timestamp", &Mesh::GetTimeStamp) .def_property_readonly("ne", [](Mesh& m) { return m.GetNE(); }) .def("Distribute", [](shared_ptr self, NgMPI_Comm comm) { self->SetCommunicator(comm); if(comm.Size()==1) return self; // if(MyMPI_GetNTasks(comm)==2) throw NgException("Sorry, cannot handle communicators with NP=2!"); // cout << " rank " << MyMPI_GetId(comm) << " of " << MyMPI_GetNTasks(comm) << " called Distribute " << endl; if(comm.Rank()==0) self->Distribute(); else self->SendRecvMesh(); return self; }, py::arg("comm")) .def_static("Receive", [](NgMPI_Comm comm) -> shared_ptr { auto mesh = make_shared(); mesh->SetCommunicator(comm); mesh->SendRecvMesh(); return mesh; }, py::arg("comm")) .def("Load", FunctionPointer ([](shared_ptr self, const string & filename) { auto comm = self->GetCommunicator(); int id = comm.Rank(); int ntasks = comm.Size(); auto & mesh = self; { ifstream infile(filename.c_str()); if(!infile.good()) throw NgException(string("Error opening file ") + filename); } if ( filename.find(".vol") == string::npos ) { if(ntasks>1) throw NgException("Not sure what to do with this?? Does this work with MPI??"); mesh->SetCommunicator(comm); ReadFile(*mesh,filename.c_str()); //mesh->SetGlobalH (mparam.maxh); //mesh->CalcLocalH(); return; } istream * infile; NgArray buf; // for distributing geometry! int strs; if( id == 0) { if (filename.substr (filename.length()-3, 3) == ".gz") infile = new igzstream (filename.c_str()); else infile = new ifstream (filename.c_str()); mesh -> Load(*infile); // make string from rest of file (for geometry info!) // (this might be empty, in which case we take the global ng_geometry) stringstream geom_part; geom_part << infile->rdbuf(); string geom_part_string = geom_part.str(); strs = geom_part_string.size(); // buf = new char[strs]; buf.SetSize(strs); memcpy(&buf[0], geom_part_string.c_str(), strs*sizeof(char)); delete infile; if (ntasks > 1) { char * weightsfilename = new char [filename.size()+1]; strcpy (weightsfilename, filename.c_str()); weightsfilename[strlen (weightsfilename)-3] = 'w'; weightsfilename[strlen (weightsfilename)-2] = 'e'; weightsfilename[strlen (weightsfilename)-1] = 'i'; ifstream weightsfile(weightsfilename); delete [] weightsfilename; if (!(weightsfile.good())) { // cout << "regular distribute" << endl; mesh -> Distribute(); } else { char str[20]; bool endfile = false; int n, dummy; NgArray segment_weights; NgArray surface_weights; NgArray volume_weights; while (weightsfile.good() && !endfile) { weightsfile >> str; if (strcmp (str, "edgeweights") == 0) { weightsfile >> n; segment_weights.SetSize(n); for (int i = 0; i < n; i++) weightsfile >> dummy >> segment_weights[i]; } if (strcmp (str, "surfaceweights") == 0) { weightsfile >> n; surface_weights.SetSize(n); for (int i=0; i> dummy >> surface_weights[i]; } if (strcmp (str, "volumeweights") == 0) { weightsfile >> n; volume_weights.SetSize(n); for (int i=0; i> dummy >> volume_weights[i]; } if (strcmp (str, "endfile") == 0) endfile = true; } mesh -> Distribute(volume_weights, surface_weights, segment_weights); } } // ntasks>1 end } // id==0 end else { mesh->SendRecvMesh(); } if(ntasks>1) { #ifdef PARALLEL /** Scatter the geometry-string (no dummy-implementation in mpi_interface) **/ int strs = buf.Size(); MyMPI_Bcast(strs, comm); if(strs>0) MyMPI_Bcast(buf, comm); #endif } shared_ptr geo; if(buf.Size()) { // if we had geom-info in the file, take it istringstream geom_infile(string((const char*)&buf[0], buf.Size())); geo = geometryregister.LoadFromMeshFile(geom_infile); } if(geo!=nullptr) mesh->SetGeometry(geo); else if(ng_geometry!=nullptr) mesh->SetGeometry(ng_geometry); }),py::call_guard()) // static_cast(&Mesh::Load)) .def("Save", static_cast(&Mesh::Save),py::call_guard()) .def("Export", [] (Mesh & self, string filename, string format) { if (WriteUserFormat (format, self, /* *self.GetGeometry(), */ filename)) { string err = string ("nothing known about format")+format; NgArray names, extensions; RegisterUserFormats (names, extensions); err += "\navailable formats are:\n"; for (auto name : names) err += string("'") + name + "'\n"; throw NgException (err); } }, py::arg("filename"), py::arg("format"),py::call_guard()) .def_property("dim", &Mesh::GetDimension, &Mesh::SetDimension) .def("Elements3D", static_cast&(Mesh::*)()> (&Mesh::VolumeElements), py::return_value_policy::reference) .def("Elements2D", static_cast&(Mesh::*)()> (&Mesh::SurfaceElements), py::return_value_policy::reference) .def("Elements1D", static_cast&(Mesh::*)()> (&Mesh::LineSegments), py::return_value_policy::reference) .def("Elements0D", FunctionPointer([] (Mesh & self) -> Array& { return self.pointelements; } ), py::return_value_policy::reference) .def("Points", static_cast (&Mesh::Points), py::return_value_policy::reference) .def("FaceDescriptor", static_cast (&Mesh::GetFaceDescriptor), py::return_value_policy::reference) .def("GetNFaceDescriptors", &Mesh::GetNFD) .def("GetVolumeNeighboursOfSurfaceElement", [](Mesh & self, size_t sel) { int elnr1, elnr2; self.GetTopology().GetSurface2VolumeElement(sel+1, elnr1, elnr2); return py::make_tuple(elnr1, elnr2); }, "Returns element nrs of volume element connected to surface element, -1 if no volume element") .def("GetNCD2Names", &Mesh::GetNCD2Names) .def("__getitem__", [](const Mesh & self, PointIndex id) { return self[id]; }) .def("__getitem__", [](const Mesh & self, ElementIndex id) { return self[id]; }) .def("__getitem__", [](const Mesh & self, SurfaceElementIndex id) { return self[id]; }) .def("__getitem__", [](const Mesh & self, SegmentIndex id) { return self[id]; }) .def("__setitem__", [](Mesh & self, PointIndex id, const MeshPoint & mp) { return self[id] = mp; }) .def ("Add", [](Mesh & self, MeshPoint p) { return self.AddPoint (Point3d(p)); }) .def ("Add", [](Mesh & self, const Element & el) { return self.AddVolumeElement (el); }) .def ("Add", [](Mesh & self, const Element2d & el) { return self.AddSurfaceElement (el); }) .def ("Add", [](Mesh & self, const Segment & el) { return self.AddSegment (el); }) .def ("Add", [](Mesh & self, const Element0d & el) { return self.pointelements.Append (el); }) .def ("Add", [](Mesh & self, const FaceDescriptor & fd) { return self.AddFaceDescriptor (fd); }) .def ("DeleteSurfaceElement", [](Mesh & self, SurfaceElementIndex i) { return self.Delete(i); }) .def ("Compress", [](Mesh & self) { return self.Compress (); } ,py::call_guard()) .def ("SetBCName", &Mesh::SetBCName) .def ("GetBCName", FunctionPointer([](Mesh & self, int bc)->string { return self.GetBCName(bc); })) .def ("SetMaterial", &Mesh::SetMaterial) .def ("GetMaterial", FunctionPointer([](Mesh & self, int domnr) { return string(self.GetMaterial(domnr)); })) .def ("GetCD2Name", &Mesh::GetCD2Name) .def ("SetCD2Name", &Mesh::SetCD2Name) .def ("GetCD3Name", &Mesh::GetCD3Name) .def ("SetCD3Name", &Mesh::SetCD3Name) .def ("AddPointIdentification", [](Mesh & self, py::object pindex1, py::object pindex2, int identnr, int type) { if(py::extract(pindex1).check() && py::extract(pindex2).check()) { self.GetIdentifications().Add (py::extract(pindex1)(), py::extract(pindex2)(), identnr); self.GetIdentifications().SetType(identnr, Identifications::ID_TYPE(type)); // type = 2 ... periodic } }, //py::default_call_policies(), py::arg("pid1"), py::arg("pid2"), py::arg("identnr"), py::arg("type")) .def ("CalcLocalH", &Mesh::CalcLocalH) .def ("SetMaxHDomain", [] (Mesh& self, py::list maxhlist) { NgArray maxh; for(auto el : maxhlist) maxh.Append(py::cast(el)); self.SetMaxHDomain(maxh); }) .def ("GenerateVolumeMesh", [](Mesh & self, MeshingParameters* pars, py::kwargs kwargs) { MeshingParameters mp; if(pars) mp = *pars; { py::gil_scoped_acquire acquire; CreateMPfromKwargs(mp, kwargs); } MeshVolume (mp, self); OptimizeVolume (mp, self); }, py::arg("mp")=nullptr, meshingparameter_description.c_str(), py::call_guard()) .def ("OptimizeVolumeMesh", [](Mesh & self) { MeshingParameters mp; mp.optsteps3d = 5; OptimizeVolume (mp, self); },py::call_guard()) .def ("OptimizeMesh2d", [](Mesh & self) { self.CalcLocalH(0.5); MeshingParameters mp; mp.optsteps2d = 5; Optimize2d (self, mp); },py::call_guard()) .def ("Refine", FunctionPointer ([](Mesh & self) { self.GetGeometry()->GetRefinement().Refine(self); self.UpdateTopology(); }),py::call_guard()) .def ("SecondOrder", FunctionPointer ([](Mesh & self) { self.GetGeometry()->GetRefinement().MakeSecondOrder(self); })) .def ("GetGeometry", [] (Mesh& self) { return self.GetGeometry(); }) .def ("SetGeometry", [](Mesh & self, shared_ptr geo) { self.SetGeometry(geo); }) /* .def ("SetGeometry", FunctionPointer ([](Mesh & self, shared_ptr geo) { self.SetGeometry(geo); })) */ .def ("BuildSearchTree", &Mesh::BuildElementSearchTree,py::call_guard()) .def ("BoundaryLayer", FunctionPointer ([](Mesh & self, int bc, py::list thicknesses, int volnr, py::list materials) { int n = py::len(thicknesses); BoundaryLayerParameters blp; for (int i = 1; i <= self.GetNFD(); i++) if (self.GetFaceDescriptor(i).BCProperty() == bc) blp.surfid.Append (i); cout << "add layer at surfaces: " << blp.surfid << endl; blp.prismlayers = n; blp.growthfactor = 1.0; // find max domain nr int maxind = 0; for (ElementIndex ei = 0; ei < self.GetNE(); ei++) maxind = max (maxind, self[ei].GetIndex()); cout << "maxind = " << maxind << endl; for ( int i=0; i(thicknesses[i])()) ; blp.new_matnrs.Append( maxind+1+i ); self.SetMaterial (maxind+1+i, py::extract(materials[i])().c_str()); } blp.bulk_matnr = volnr; GenerateBoundaryLayer (self, blp); } )) .def ("BoundaryLayer", FunctionPointer ([](Mesh & self, int bc, double thickness, int volnr, string material) { BoundaryLayerParameters blp; for (int i = 1; i <= self.GetNFD(); i++) if (self.GetFaceDescriptor(i).BCProperty() == bc) blp.surfid.Append (i); cout << "add layer at surfaces: " << blp.surfid << endl; blp.prismlayers = 1; blp.hfirst = thickness; blp.growthfactor = 1.0; // find max domain nr int maxind = 0; for (ElementIndex ei = 0; ei < self.GetNE(); ei++) maxind = max (maxind, self[ei].GetIndex()); cout << "maxind = " << maxind << endl; self.SetMaterial (maxind+1, material.c_str()); blp.new_matnr = maxind+1; blp.bulk_matnr = volnr; GenerateBoundaryLayer (self, blp); } )) .def ("EnableTable", [] (Mesh & self, string name, bool set) { if (name == "edges") const_cast(self.GetTopology()).SetBuildEdges(set); if (name == "faces") const_cast(self.GetTopology()).SetBuildFaces(set); }, py::arg("name"), py::arg("set")=true) .def ("Scale", [](Mesh & self, double factor) { for(auto i = 0; i (); *m2 = self; return m2; }) .def ("CalcMinMaxAngle", [](Mesh & self, double badel_limit) { double values[4]; self.CalcMinMaxAngle (badel_limit, values); py::dict res; res["trig"] = py::make_tuple( values[0], values[1] ); res["tet"] = py::make_tuple( values[2], values[3] ); return res; }, py::arg("badelement_limit")=175.0) ; m.def("ImportMesh", [](const string& filename) { auto mesh = make_shared(); ReadFile(*mesh, filename); return mesh; }, py::arg("filename"), R"delimiter(Import mesh from other file format, supported file formats are: Neutral format (*.mesh, *.emt) Surface file (*.surf) Universal format (*.unv) Olaf format (*.emt) Tet format (*.tet) Pro/ENGINEER format (*.fnf) )delimiter"); py::enum_(m,"MeshingStep") .value("MESHEDGES",MESHCONST_MESHEDGES) .value("MESHSURFACE",MESHCONST_OPTSURFACE) .value("MESHVOLUME",MESHCONST_OPTVOLUME) ; typedef MeshingParameters MP; auto mp = py::class_ (m, "MeshingParameters") .def(py::init<>()) .def(py::init([](MeshingParameters* other, py::kwargs kwargs) { MeshingParameters mp; if(other) mp = *other; CreateMPfromKwargs(mp, kwargs, false); return mp; }), py::arg("mp")=nullptr, meshingparameter_description.c_str()) .def("__str__", &ToString) .def("RestrictH", FunctionPointer ([](MP & mp, double x, double y, double z, double h) { mp.meshsize_points.Append ( MeshingParameters::MeshSizePoint (Point<3> (x,y,z), h)); }), py::arg("x"), py::arg("y"), py::arg("z"), py::arg("h") ) ; m.def("SetTestoutFile", FunctionPointer ([] (const string & filename) { delete testout; testout = new ofstream (filename); })); m.def("SetMessageImportance", FunctionPointer ([] (int importance) { int old = printmessage_importance; printmessage_importance = importance; return old; })); } PYBIND11_MODULE(libmesh, m) { ExportNetgenMeshing(m); } #endif