mirror of
https://git.salome-platform.org/gitpub/modules/smesh.git
synced 2024-12-25 08:50:35 +05:00
Improve projection of dual mesh nodes:
- first project nodes on edges, then project on faces - keep the relation from the sub-shapes to the mesh by groups Also: - Code cleaning in dual mesh - Remove tmp folder of dual mesh - Fix for Windows (thanks to Nabil)
This commit is contained in:
Christophe Bourcier
jfa
parent
3394d5fce1
commit
2653bcf374
@ -2859,14 +2859,15 @@ SMESH::SMESH_Mesh_ptr SMESH_Gen_i::CreateDualMesh(SMESH::SMESH_IDSource_ptr mesh
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ats = "False";
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std::string cmd="import salome.smesh.smesh_tools as smt\n";
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cmd +="smt.smesh_create_dual_mesh(\"" + mesh_ior + "\", \"" +
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cmd +="smt.smesh_create_dual_mesh(\"" + mesh_ior + "\", r\"" +
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dual_mesh_file.string() + "\", mesh_name=\"" + mesh_name + "\", adapt_to_shape=" + ats + ")";
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MESSAGE(cmd);
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PyObject *py_main = PyImport_AddModule("__main__");
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PyObject *py_dict = PyModule_GetDict(py_main);
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PyObject *local_dict = PyDict_New();
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PyRun_String(cmd.c_str(), Py_file_input, py_dict, py_dict);
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PyRun_String(cmd.c_str(), Py_file_input, py_dict, local_dict);
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if (PyErr_Occurred()) {
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// Restrieving python error
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@ -2931,6 +2932,10 @@ SMESH::SMESH_Mesh_ptr SMESH_Gen_i::CreateDualMesh(SMESH::SMESH_IDSource_ptr mesh
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MESSAGE("Dump of groups");
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SMESH::ListOfGroups_var groups = newMesh->GetGroups();
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#ifndef _DEBUG_
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fs::remove_all(tmp_folder);
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#endif
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return newMesh._retn();
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}
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@ -804,7 +804,6 @@ class smeshBuilder( SMESH._objref_SMESH_Gen, object ):
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"""
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if isinstance( mesh, Mesh ):
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mesh = mesh.GetMesh()
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print("calling createdualmesh from Python")
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dualMesh = SMESH._objref_SMESH_Gen.CreateDualMesh(self, mesh, meshName, adaptToShape)
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return Mesh(self, self.geompyD, dualMesh)
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@ -1,12 +1,7 @@
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#!/usr/bin/env python3
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import sys
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import salome
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import medcoupling as mc
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from math import pi
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import numpy as np
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#salome.salome_init()
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import GEOM
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from salome.geom import geomBuilder
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@ -20,60 +15,48 @@ smesh = smeshBuilder.New()
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from salome.kernel.logger import Logger
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logger = Logger("salome.smesh.smesh_tools")
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logger.setLevel("DEBUG")
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logger.setLevel("WARNING")
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def smesh_create_dual_mesh(mesh_ior, output_file, adapt_to_shape=True, mesh_name="MESH"):
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""" Create a dual of the mesh in input_file into output_file
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# prefix for groups with internal usage
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# i.e. used to transfer the faces and edges sub-shapes ids to the mesh
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__prefix = "____"
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def __getIdsGrpDualFromOrig(mc_mesh_file, grp_name, mesh2d, grp_level):
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""" Identify the polygonal cells ids matching the original group on the
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original mesh (before dual mesh)
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Args:
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mesh_ior (string): corba Id of the Tetrahedron mesh
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output_file (string): dual mesh file
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mc_mesh_file (MEDFileMesh): mesh on which to read the group
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grp_name (string): name of the group to read
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mesh2d (MEDCouplingUMesh): mesh at lower level (-1 or -2) containing
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faces or segments cells
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grp_level (int): level on which to load the group (-1 or -2)
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Returns:
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id_grp_poly (DataArrayInt64): ids of cells mathcing the group. None if
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the group has not been found.
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nodes_added (DataArrayInt64): new nodes added on the dual mesh
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"""
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# Import mesh from file
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mesh = salome.orb.string_to_object(mesh_ior)
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if not mesh:
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raise Exception("Could not find mesh using id: ", mesh_ior)
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shape = mesh.GetShapeToMesh()
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# Creating output file
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logger.debug("Creating file with mesh: "+mesh_name)
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myfile = mc.MEDFileUMesh()
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myfile.setName(mesh_name)
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# We got a meshProxy so we need to convert pointer to MEDCoupling
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int_ptr = mesh.ExportMEDCoupling(True, True)
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dab = mc.FromPyIntPtrToDataArrayByte(int_ptr)
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mc_mesh_file = mc.MEDFileMesh.New(dab)
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tetras = mc_mesh_file[0]
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# End of SMESH -> MEDCoupling part for dualmesh
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tetras = mc.MEDCoupling1SGTUMesh(tetras)
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polyh = tetras.computeDualMesh()
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## Adding skin + transfering groups on faces from tetras mesh
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mesh2d = polyh.buildUnstructured().computeSkin()
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mesh2d.setName(mesh_name)
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myfile.setMeshAtLevel(-1, mesh2d)
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for grp_name in mc_mesh_file.getGroupsOnSpecifiedLev(-1):
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# This group is created by the export
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if grp_name == "Group_Of_All_Faces":
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logger.debug("Skipping group: "+ grp_name)
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continue
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logger.debug("Transferring group: "+ grp_name)
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grp_tria = mc_mesh_file.getGroup(-1, grp_name)
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try:
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grp_tria = mc_mesh_file.getGroup(grp_level, grp_name)
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except:
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logger.debug("""No group found for %s at level %i.
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It is normal behaviour for degenerated geom edge."""\
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%(grp_name, grp_level))
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return None, None
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# Retrieve the nodes in group
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grp_nodes = grp_tria.computeFetchedNodeIds()
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orig_grp_nodes = grp_tria.computeFetchedNodeIds()
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# Find all the cells lying on one of the nodes
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id_grp_poly = mesh2d.getCellIdsLyingOnNodes(grp_nodes, False)
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id_grp_poly = mesh2d.getCellIdsLyingOnNodes(orig_grp_nodes, False)
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grp_poly = mesh2d[id_grp_poly]
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if grp_poly.getNumberOfCells() == 0:
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logger.debug("""No poly cell found for %s at level %i."""\
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%(grp_name, grp_level))
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return None, None
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# find the extra face cells, on the border of the group (lying on nodes, but outside the group)
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# find the extra face cells, on the border of the group (lying on nodes,
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# but outside the group)
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id_poly_border = grp_poly.findCellIdsOnBoundary()
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# ids of the cells in grp_poly
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@ -84,44 +67,188 @@ def smesh_create_dual_mesh(mesh_ior, output_file, adapt_to_shape=True, mesh_name
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id_to_keep = id_poly.buildSubstraction(id_poly_border)
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id_grp_poly = id_grp_poly[id_to_keep]
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id_grp_poly.setName(grp_name.strip())
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myfile.addGroup(-1, id_grp_poly)
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# get nodes added on this group
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grp_poly = mesh2d[id_grp_poly]
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grp_nodes_poly = grp_poly.computeFetchedNodeIds()
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nodes_added = grp_nodes_poly.buildSubstraction(orig_grp_nodes)
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# Getting list of new points added on the skin
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skin = tetras.buildUnstructured().computeSkin()
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skin_polyh = polyh.buildUnstructured().computeSkin()
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allNodesOnSkinPolyh = skin_polyh.computeFetchedNodeIds()
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allNodesOnSkin = skin.computeFetchedNodeIds()
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ptsAdded = allNodesOnSkinPolyh.buildSubstraction(allNodesOnSkin)
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ptsAddedMesh = mc.MEDCouplingUMesh.Build0DMeshFromCoords( skin_polyh.getCoords()[ptsAdded] )
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return id_grp_poly, nodes_added
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def __projectNodeOnSubshape(nodes, subshape, coords):
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""" Project nodes on a sub-shape (face or edge) and update the mesh
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coordinates
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Args:
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nodes (DataArrayInt): nodes ids to project
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subshape (GEOM object): face or edge on which to project the nodes
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coords (DataArrayDouble): coordinates of the mesh to update. These
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coordinates are modified inside this function.
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"""
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for i in nodes:
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x, y, z = coords[i].getValues()
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vertex = geompy.MakeVertex(x, y, z)
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try:
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prj = geompy.MakeProjection(vertex, subshape)
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except:
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logger.warning("Projection failed for %.5f %.5f %.5f but we continue with next node"%(x, y, z))
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continue
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new_coor = geompy.PointCoordinates(prj)
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# update its coordinates in the mesh
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coords[i] = new_coor
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pass
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def __deleteObj(theObj):
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""" Delete object from a Study
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Args:
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theObj (GEOM or SMESH object): object to remove from the study
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"""
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aStudy = salome.myStudy
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aStudyBuilder = aStudy.NewBuilder()
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SO = aStudy.FindObjectIOR(aStudy.ConvertObjectToIOR(theObj))
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if SO is not None:
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aStudyBuilder.RemoveObjectWithChildren(SO)
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pass
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def smesh_create_dual_mesh(mesh_ior, output_file, adapt_to_shape=True,
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mesh_name="MESH"):
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""" Create a dual of the mesh in input_file into output_file
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Args:
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mesh_ior (string): corba Id of the Tetrahedron mesh
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output_file (string): dual mesh file
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adapt_to_shape (bool): If True will project boundary points on shape
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mesh_name (string): Name of the dual Mesh
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"""
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# Import mesh from file
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mesh = salome.orb.string_to_object(mesh_ior)
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if not mesh:
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raise Exception("Could not find mesh using id: ", mesh_ior)
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shape = mesh.GetShapeToMesh()
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if adapt_to_shape:
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logger.debug("Adapting to shape")
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ptsAddedCoo = ptsAddedMesh.getCoords()
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ptsAddedCooModified = ptsAddedCoo[:]
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faces = geompy.SubShapeAll(shape, geompy.ShapeType["FACE"])
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faces_ids = geompy.GetSubShapesIDs(shape, faces)
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# Matching faces with their ids
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faces = geompy.ExtractShapes(shape, geompy.ShapeType["FACE"], True)
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# Create group with each face
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# so that we don't need GetFaceNearPoint to get the face to project the
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# point to
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id2face = {}
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for face in faces:
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id2face[face.GetSubShapeIndices()[0]] = face
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id2face_edges_ids = {}
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mesh_groups = []
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for face, face_id in zip(faces, faces_ids):
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gr_mesh = mesh.CreateGroupFromGEOM(SMESH.FACE,
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'%sface_%i'%(__prefix, face_id),
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face)
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id2face[face_id] = face
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mesh_groups.append(gr_mesh)
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# get the edges bounding this face
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# so that we can project the nodes on edges before nodes on faces
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face_edges = geompy.SubShapeAll(face, geompy.ShapeType["EDGE"])
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face_edges_ids = geompy.GetSubShapesIDs(shape, face_edges)
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id2face_edges_ids[face_id] = face_edges_ids
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## Projecting each points added by the dual mesh on the surface it is
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# associated with
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for i, tup in enumerate(ptsAddedCooModified):
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vertex = geompy.MakeVertex(*tuple(tup))
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shapes = geompy.GetShapesNearPoint(shape, vertex,
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geompy.ShapeType["FACE"])
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prj = geompy.MakeProjection(vertex,
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id2face[shapes.GetSubShapeIndices()[0]])
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new_coor = geompy.PointCoordinates(prj)
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ptsAddedCooModified[i] = new_coor
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edges = geompy.SubShapeAll(shape, geompy.ShapeType["EDGE"])
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edges_ids = geompy.GetSubShapesIDs(shape, edges)
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polyh.getCoords()[ptsAdded] = ptsAddedCooModified
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id2edge = {}
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for edge, edge_id in zip(edges, edges_ids):
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gr_mesh = mesh.CreateGroupFromGEOM(SMESH.EDGE,
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'%sedge_%i'%(__prefix, edge_id),
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edge)
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id2edge[edge_id] = edge
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mesh_groups.append(gr_mesh)
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# We got a meshProxy so we need to convert pointer to MEDCoupling
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int_ptr = mesh.ExportMEDCoupling(True, True)
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dab = mc.FromPyIntPtrToDataArrayByte(int_ptr)
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mc_mesh_file = mc.MEDFileMesh.New(dab)
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tetras = mc_mesh_file[0]
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# End of SMESH -> MEDCoupling part for dualmesh
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tetras = mc.MEDCoupling1SGTUMesh(tetras)
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# Create the polyhedra from the tetrahedra (main goal of this function)
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polyh = tetras.computeDualMesh()
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## Adding skin + transfering groups on faces from tetras mesh
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mesh2d = polyh.buildUnstructured().computeSkin()
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mesh2d.setName(mesh_name)
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polyh_coords = polyh.getCoords()
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treated_edges = []
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mc_groups = []
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for grp_name in mc_mesh_file.getGroupsOnSpecifiedLev(-1):
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# This group is created by the export
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if grp_name == "Group_Of_All_Faces":
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logger.debug("Skipping group: "+ grp_name)
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continue
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logger.debug("Transferring group: "+ grp_name)
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# get the polygons ids on the dual mesh from the triangles group
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id_grp_poly, nodes_added_on_tri = \
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__getIdsGrpDualFromOrig(mc_mesh_file, grp_name, mesh2d, -1)
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if id_grp_poly is not None and grp_name[:4] == __prefix:
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# This group is on a specific geom face
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face_id = grp_name.split("_")[-1]
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face_id = int(face_id)
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face = id2face[face_id]
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# for each face, get the edges bounding it
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grp_poly = mesh2d[id_grp_poly]
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mesh1d = grp_poly.computeSkin()
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face_edges_id = id2face_edges_ids[face_id]
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for edge_id in face_edges_id:
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grp_seg_name = "%sedge_%i"%(__prefix, edge_id)
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# get the segs on the dual mesh from the segs group
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id_grp_seg, nodes_added_on_segs = __getIdsGrpDualFromOrig(\
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mc_mesh_file, grp_seg_name, mesh1d, -2)
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# project new nodes on its geom edge
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# (if the group exists on this edge and it has not already been
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# treated)
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if id_grp_seg is not None:
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if edge_id not in treated_edges:
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edge = id2edge[edge_id]
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__projectNodeOnSubshape(nodes_added_on_segs,
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edge, polyh_coords)
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else:
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treated_edges.append(edge_id)
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# remove these nodes from the nodes to project on face
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nodes_added_on_tri = \
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nodes_added_on_tri.buildSubstraction(nodes_added_on_segs)
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# project new nodes on its geom face
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__projectNodeOnSubshape(nodes_added_on_tri, face, polyh_coords)
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else:
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# add the group to write it
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mc_groups.append(id_grp_poly)
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# Creating output file
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logger.debug("Creating file with mesh: "+mesh_name)
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myfile = mc.MEDFileUMesh()
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myfile.setName(mesh_name)
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polyh.setName(mesh_name)
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myfile.setMeshAtLevel(0, polyh)
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myfile.setMeshAtLevel(-1, mesh2d)
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logger.debug("Writting dual mesh in :"+output_file)
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for group in mc_groups:
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myfile.addGroup(-1, group)
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logger.debug("Writing dual mesh in: "+output_file)
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myfile.write(output_file, 2)
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if adapt_to_shape:
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# delete temporary groups
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for grp in mesh_groups:
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__deleteObj(grp)
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@ -85,6 +85,8 @@ dual_Mesh_1 = smesh.CreateDualMesh(Mesh_1, 'dual_Mesh_1', True)
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#Comparing volumes
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dual_volume = dual_Mesh_1.GetVolume()
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dual_raw_volume = dual_Mesh_raw_1.GetVolume()
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tetra_volume = Mesh_1.GetVolume()
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print("tetra_volume: ", tetra_volume)
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print("dual_volume: ", dual_volume)
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print("dual_raw_volume: ", dual_raw_volume)
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@ -79,20 +79,24 @@ Mesh_1 = smesh.Mesh(tpipe, "Mesh_coarse")
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Mesh_1.Triangle(algo=smeshBuilder.NETGEN_1D2D)
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Mesh_1.Tetrahedron(algo=smeshBuilder.NETGEN_3D)
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algo3d = Mesh_1.Tetrahedron(algo=smeshBuilder.NETGEN_3D)
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algo3d.MaxElementVolume(0.0002)
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isDone = Mesh_1.Compute()
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# Create groups
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d_geom_groups = {}
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d_mesh_groups = {}
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for geom_group in geom_groups:
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gr = Mesh_1.Group(geom_group)
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gr_name = gr.GetName()
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d_mesh_groups[gr_name] = gr
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d_geom_groups[gr_name] = geom_group
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# Check tetra mesh volume
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mesh_volume = smesh.GetVolume(Mesh_1)
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tetra_volume = smesh.GetVolume(Mesh_1)
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shape_volume = geompy.BasicProperties(tpipe)[2]
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assert abs(mesh_volume-shape_volume)/shape_volume < 0.05
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assert abs(tetra_volume-shape_volume)/shape_volume < 0.05
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dual_Mesh_raw_1 = smesh.CreateDualMesh(Mesh_1, 'dual_Mesh_raw_1', False)
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@ -102,7 +106,7 @@ assert dual_Mesh_raw_1.NbPolyhedrons() == dual_Mesh_raw_1.NbVolumes()
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# Check dual mesh volume
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dual_raw_volume = dual_Mesh_raw_1.GetVolume()
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assert abs(dual_raw_volume-shape_volume)/shape_volume < 0.11
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assert abs(dual_raw_volume-shape_volume)/shape_volume < 0.14
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# Check groups
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dual_Mesh_raw_groups = dual_Mesh_raw_1.GetGroups()
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@ -110,25 +114,44 @@ dual_Mesh_raw_group_names = dual_Mesh_raw_1.GetGroupNames()
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assert len(dual_Mesh_raw_groups) == 4
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for gr_dual, gr_name in zip(dual_Mesh_raw_groups, dual_Mesh_raw_group_names):
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## Create dual mesh with projection on faces
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dual_Mesh_1 = smesh.CreateDualMesh(Mesh_1, 'dual_Mesh_1', True)
|
||||
|
||||
# Check dual mesh volume
|
||||
dual_volume = dual_Mesh_1.GetVolume()
|
||||
print("shape_volume: ", shape_volume)
|
||||
print("tetra_volume: ", tetra_volume)
|
||||
print("dual_volume: ", dual_volume)
|
||||
print("dual_raw_volume: ", dual_raw_volume)
|
||||
assert (dual_volume >= dual_raw_volume)
|
||||
|
||||
assert abs(dual_volume-shape_volume)/shape_volume < 0.14
|
||||
|
||||
# Check groups
|
||||
dual_Mesh_groups = dual_Mesh_1.GetGroups()
|
||||
dual_Mesh_group_names = dual_Mesh_1.GetGroupNames()
|
||||
d_mesh_dual_groups = {}
|
||||
for gr_name, gr in zip(dual_Mesh_group_names, dual_Mesh_groups):
|
||||
gr_name = gr_name.strip()
|
||||
d_mesh_dual_groups[gr_name] = gr
|
||||
|
||||
for gr_dual_raw, gr_name in zip(dual_Mesh_raw_groups, dual_Mesh_raw_group_names):
|
||||
gr_name = gr_name.strip()
|
||||
gr_tri = d_mesh_groups[gr_name]
|
||||
gr_dual = d_mesh_dual_groups[gr_name]
|
||||
gr_geom = d_geom_groups[gr_name]
|
||||
area_gr_geom = geompy.BasicProperties(gr_geom)[1]
|
||||
area_gr_tri = smesh.GetArea(gr_tri)
|
||||
area_gr_dual_raw = smesh.GetArea(gr_dual_raw)
|
||||
area_gr_dual = smesh.GetArea(gr_dual)
|
||||
print(gr_name)
|
||||
print("Area geom: ", area_gr_geom)
|
||||
print("Area tri: ", area_gr_tri)
|
||||
print("Area dual raw:", area_gr_dual_raw)
|
||||
print("Area dual:", area_gr_dual)
|
||||
assert abs(area_gr_tri-area_gr_dual)/area_gr_tri < 1e-3
|
||||
assert abs(area_gr_geom-area_gr_dual)/area_gr_geom < 0.015
|
||||
assert abs(area_gr_tri-area_gr_dual_raw)/area_gr_tri < 1e-3
|
||||
|
||||
#dual_Mesh_1 = smesh.CreateDualMesh(Mesh_1, 'dual_Mesh_1', True)
|
||||
|
||||
|
||||
#dual_volume = dual_Mesh_1.GetVolume()
|
||||
#dual_raw_volume = dual_Mesh_raw_1.GetVolume()
|
||||
#print("dual_volume: ", dual_volume)
|
||||
#print("dual_raw_volume: ", dual_raw_volume)
|
||||
|
||||
#assert (dual_volume >= dual_raw_volume)
|
||||
|
||||
if salome.sg.hasDesktop():
|
||||
salome.sg.updateObjBrowser()
|
||||
|
||||
Loading…
Reference in New Issue
Block a user