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spns #19079: top-ii-vol integration in SMESH

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This commit is contained in:
Nabil Ghodbane 2022-02-12 14:20:21 +01:00
parent e1682190e9
commit d83b63b2c3
16 changed files with 1257 additions and 0 deletions
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1
doc/salome/gui/SMESH/input/tools.rst
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@ -9,6 +9,7 @@ The following plugins are accessible via **Mesh > SMESH plugins** menu:
* `SpherePadder plugin <padder/padder_userguide_page.html>`_ * `SpherePadder plugin <padder/padder_userguide_page.html>`_
* `MGSurfOpt plugin <yams/index.html>`_ * `MGSurfOpt plugin <yams/index.html>`_
* `MGCleaner plugin <MGCleaner/index.html>`_ * `MGCleaner plugin <MGCleaner/index.html>`_
* `topIIVolMesh plugin <TopIIVolMesh/index.html>`_
* `Z-cracks plugin <zcracks/index.html>`_ * `Z-cracks plugin <zcracks/index.html>`_
* `MacMesh plugin <MacMesh/index.html>`_ * `MacMesh plugin <MacMesh/index.html>`_
* `blocFissure plugin <blocFissure/index.html>`_ * `blocFissure plugin <blocFissure/index.html>`_

1
src/Tools/CMakeLists.txt
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@ -26,6 +26,7 @@ ADD_SUBDIRECTORY(MacMesh)
IF(SALOME_BUILD_GUI) IF(SALOME_BUILD_GUI)
ADD_SUBDIRECTORY(MGCleanerPlug) ADD_SUBDIRECTORY(MGCleanerPlug)
ADD_SUBDIRECTORY(YamsPlug) ADD_SUBDIRECTORY(YamsPlug)
ADD_SUBDIRECTORY(TopIIVolMeshPlug)
# ADD_SUBDIRECTORY(ZCracksPlug) # ADD_SUBDIRECTORY(ZCracksPlug)
ENDIF(SALOME_BUILD_GUI) ENDIF(SALOME_BUILD_GUI)

60
src/Tools/TopIIVolMeshPlug/CMakeLists.txt Normal file
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@ -0,0 +1,60 @@
# Copyright (C) 2013-2021 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
IF(SALOME_BUILD_DOC)
ADD_SUBDIRECTORY(doc)
ENDIF(SALOME_BUILD_DOC)
IF(SALOME_BUILD_GUI)
INCLUDE(UsePyQt)
ENDIF(SALOME_BUILD_GUI)
# --- scripts ---
# scripts / static
SET(_plugin_SCRIPTS
TopIIVolMeshPluginDialog.py
TopIIVolMeshPlugin.py
TopIIVolMeshPlugin_plugin.py
TopIIVolMeshMonitor.py
README
)
IF(SALOME_BUILD_GUI)
# uic files / to be processed by pyuic
SET(_pyuic_FILES
TopIIVolMeshPluginDialog.ui
TopIIVolMeshMonitor.ui
)
# scripts / pyuic wrappings
PYQT_WRAP_UIC(_pyuic_SCRIPTS ${_pyuic_FILES} TARGET_NAME _target_name_pyuic)
ENDIF(SALOME_BUILD_GUI)
# --- rules ---
SALOME_INSTALL_SCRIPTS("${_plugin_SCRIPTS}" ${SALOME_SMESH_INSTALL_PLUGINS})
MESSAGE(VERBOSE "iNSTALLATION FOLDER ${SALOME_SMESH_INSTALL_PLUGINS}")
IF(SALOME_BUILD_GUI)
SALOME_INSTALL_SCRIPTS("${_pyuic_SCRIPTS}" ${SALOME_SMESH_INSTALL_PLUGINS} TARGET_NAME _target_name_pyuic_py)
# add dependency of compiled py files on uic files in order
# to avoid races problems when compiling in parallel
ADD_DEPENDENCIES(${_target_name_pyuic_py} ${_target_name_pyuic})
# Install the CMake configuration files:
INSTALL(FILES "${PROJECT_SOURCE_DIR}/README" DESTINATION "${SALOME_INSTALL_CMAKE_LOCAL}")
ENDIF(SALOME_BUILD_GUI)

37
src/Tools/TopIIVolMeshPlug/README Normal file
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@ -0,0 +1,37 @@
******************************
About SALOME TopIIVolMesh plug-in
******************************
SALOME TopIIVolMesh plug-in implements an interface to the topIIvol meshing tool.
SALOME TopIIVolMesh plug-in is integrated into SALOME platform via the SALOME Mesh
module.
For more information please visit the SALOME platform web site:
<http://www.salome-platform.org/>
=======
License
=======
SALOME platform is distributed under the GNU Lesser General Public License.
See COPYING file for more details.
Also, additional information can be found at SALOME platform web site:
<http://www.salome-platform.org/downloads/license/>
============
Installation
============
=============
Documentation
=============
===============
Troubleshooting
===============
Please, send a mail to webmaster.salome@opencascade.com.

97
src/Tools/TopIIVolMeshPlug/TopIIVolMeshMonitor.py Normal file
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@ -0,0 +1,97 @@
# -*- coding: utf-8 -*-
# Copyright (C) 2013-2020 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
import os
import sys
import string
import types
import tempfile
import traceback
import pprint as PP #pretty print
from qtsalome import *
# Import des panels
from TopIIVolMeshMonitor_ui import Ui_qdLogger
verbose = True
class TopIIVolMeshMonitor(Ui_qdLogger, QDialog):
def __init__(self, parent, txt):
QDialog.__init__(self,parent)
self.setupUi(self)
self.resize( QSize(1000,600).expandedTo(self.minimumSizeHint()) )
self.qpbOK.clicked.connect( self.OnQpbOKClicked )
# Button OK is disabled until computation is finished
self.qpbOK.setEnabled(False)
self.qpbSave.clicked.connect( self.OnQpbSaveClicked )
self.qpbSave.setToolTip("Save trace in log file")
self.qpbOK.setToolTip("Close view")
self.myExecutable=QProcess(self)
self.myExecutable.readyReadStandardOutput.connect( self.readFromStdOut )
self.myExecutable.readyReadStandardError.connect( self.readFromStdErr )
self.myExecutable.finished.connect( self.computationFinished )
self.myExecutable.errorOccurred.connect( self.computationOnError )
if os.path.exists(self.parent().outputMesh):
os.remove(self.parent().outputMesh)
self.myExecutable.start(txt)
self.myExecutable.closeWriteChannel()
self.show()
def OnQpbOKClicked(self):
self.close()
def OnQpbSaveClicked(self):
outputDirectory=os.path.expanduser("~")
fn, mask = QFileDialog.getSaveFileName(None,"Save File",outputDirectory)
if not fn:
return
ulfile = os.path.abspath(str(fn))
try:
f = open(fn, 'wb')
f.write(self.qtbLogWindow.toPlainText().encode("utf-8"))
f.close()
except IOError as why:
QMessageBox.critical(self, 'Save File',
'The file <b>%s</b> could not be saved.<br>Reason: %s'%(str(fn), str(why)))
def readFromStdErr(self):
a=self.myExecutable.readAllStandardError()
aa=a.data().decode(errors='ignore')
self.qtbLogWindow.append(aa)
def readFromStdOut(self) :
a=self.myExecutable.readAllStandardOutput()
aa=a.data().decode(errors='ignore')
self.qtbLogWindow.append(aa)
def computationFinished(self):
self.qpbOK.setEnabled(True)
if self.myExecutable.exitCode() == 0:
self.parent().saveOutputMesh()
else:
QMessageBox.critical(self, 'Computation failed',
'The computation has failed.<br>Please, check the log message.')
def computationOnError(self):
self.qpbOK.setEnabled(True)
QMessageBox.critical(self, 'Computation failed',
'The computation has failed.<br>Please, check the log message.')

38
src/Tools/TopIIVolMeshPlug/TopIIVolMeshMonitor.ui Normal file
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@ -0,0 +1,38 @@
<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>qdLogger</class>
<widget class="QDialog" name="qdLogger">
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>469</width>
<height>489</height>
</rect>
</property>
<property name="windowTitle">
<string>Run TopIIVolMesh</string>
</property>
<layout class="QGridLayout" name="gridLayout">
<item row="1" column="1">
<widget class="QPushButton" name="qpbSave">
<property name="text">
<string>Save log</string>
</property>
</widget>
</item>
<item row="0" column="0" colspan="2">
<widget class="QTextBrowser" name="qtbLogWindow"/>
</item>
<item row="1" column="0">
<widget class="QPushButton" name="qpbOK">
<property name="text">
<string>Ok</string>
</property>
</widget>
</item>
</layout>
</widget>
<resources/>
<connections/>
</ui>

36
src/Tools/TopIIVolMeshPlug/TopIIVolMeshPlugin.py Normal file
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@ -0,0 +1,36 @@
# -*- coding: utf-8 -*-
# Copyright (C) 2013-2020 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
# if you already have plugins defined in a salome_plugins.py file, add this file at the end.
# if not, copy this file as ${HOME}/Plugins/smesh_plugins.py or ${APPLI}/Plugins/smesh_plugins.py
def TopIIVolMeshLct(context):
# get context study, salomeGui
study = context.study
sg = context.sg
import os
import subprocess
import tempfile
from qtsalome import QFileDialog, QMessageBox
import TopIIVolMeshPluginDialog
window = TopIIVolMeshPluginDialog.getInstance()
window.show()

164
src/Tools/TopIIVolMeshPlug/TopIIVolMeshPluginDialog.py Normal file
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@ -0,0 +1,164 @@
# -*- coding: utf-8 -*-
# Copyright (C) 2013-2020 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
import os, subprocess
import random
import getpass
import time
import pathlib
# set seed
from datetime import datetime
random.seed(datetime.now())
import platform
import tempfile
from TopIIVolMeshPluginDialog_ui import Ui_TopIIVolMeshMainFrame
from TopIIVolMeshMonitor import TopIIVolMeshMonitor
from qtsalome import *
verbose = True
class TopIIVolMeshPluginDialog(Ui_TopIIVolMeshMainFrame,QWidget):
"""
"""
def __init__(self):
QWidget.__init__(self)
self.setupUi(self)
self.qpbHelp.clicked.connect(self.OnQpbHelpClicked)
self.qpbCompute.clicked.connect(self.OnQpbComputeClicked)
self.qpbMeshFile.clicked.connect(self.OnQpbMeshFileClicked)
self.qpbMeshFile.setToolTip("Select input DEM file")
self.qpbClose.clicked.connect(self.OnQpbCloseClicked)
self.qcbDistributed.stateChanged[int].connect(self.OnqcbDistributedClicked)
self.qlbXParts.setVisible(False)
self.qlbYParts.setVisible(False)
self.qlbZParts.setVisible(False)
self.qsbXParts.setVisible(False)
self.qsbYParts.setVisible(False)
self.qsbZParts.setVisible(False)
self.SALOME_TMP_DIR = None
try:
self.qleTmpDir.setText(os.path.join('/tmp',getpass.getuser(),'top-ii-vol'))
except:
self.qleTmpDir.setText('/tmp')
self.resize(800, 500)
self.outputMesh = ''
def OnQpbHelpClicked(self):
import SalomePyQt
sgPyQt = SalomePyQt.SalomePyQt()
try:
mydir=os.environ["SMESH_ROOT_DIR"]
except Exception:
QMessageBox.warning(self, "Help", "Help unavailable $SMESH_ROOT_DIR not found")
return
myDoc=mydir + "/share/doc/salome/gui/SMESH/TopIIVolMesh/index.html"
sgPyQt.helpContext(myDoc,"")
def OnQpbMeshFileClicked(self):
fd = QFileDialog(self, "select an existing Mesh file", self.qleMeshFile.text(), "Mesh-Files (*.xyz);;All Files (*)")
if fd.exec_():
infile = fd.selectedFiles()[0]
self.qleMeshFile.setText(infile)
def OnQpbComputeClicked(self):
if self.qleMeshFile.text() == '':
QMessageBox.critical(self, "Mesh", "select an input mesh")
return
inputMesh = self.qleMeshFile.text()
# retrieve x,y,z and depth parameters
xPoints = self.qsbXPoints.value()
yPoints = self.qsbYPoints.value()
zPoints = self.qsbZPoints.value()
depth = self.qsbDepth.value()
nProcs = self.qsbNBprocs.value()
if not self.qcbDistributed.isChecked():
if nProcs == 1:
shellCmd = "topIIvol_Mesher"
else:
shellCmd = "mpirun -np {} topIIvol_ParMesher".format(nProcs)
shellCmd+= " --xpoints " + str(xPoints)
shellCmd+= " --ypoints " + str(yPoints)
shellCmd+= " --zpoints " + str(zPoints)
shellCmd+= " --depth " + str(depth)
shellCmd+= " --in " + inputMesh
else:
xParts = self.qsbXParts.value()
yParts = self.qsbYParts.value()
zParts = self.qsbZParts.value()
shellCmd = "mpirun -np {} topIIvol_DistMesher".format(nProcs)
shellCmd+= " --xpoints " + str(xPoints)
shellCmd+= " --ypoints " + str(yPoints)
shellCmd+= " --zpoints " + str(zPoints)
shellCmd+= " --depth " + str(depth)
shellCmd+= " --partition_x " + str(xParts)
shellCmd+= " --partition_y " + str(xParts)
shellCmd+= " --partition_z " + str(xParts)
shellCmd+= " --in " + inputMesh
if platform.system()=="Windows" :
self.SALOME_TMP_DIR = os.getenv("SALOME_TMP_DIR")
else:
self.SALOME_TMP_DIR = os.path.join(self.qleTmpDir.text(), time.strftime("%Y-%m-%d-%H-%M-%S"))
pathlib.Path(self.SALOME_TMP_DIR).mkdir(parents=True, exist_ok=True)
self.outputMesh= os.path.join(self.SALOME_TMP_DIR, inputMesh.split('/').pop().replace('.xyz','.mesh'))
shellCmd+= " --out " + self.outputMesh
print("INFO: ", shellCmd)
myMonitorView=TopIIVolMeshMonitor(self, shellCmd)
def OnqcbDistributedClicked(self):
state = self.qcbDistributed.isChecked()
self.qlbXParts.setVisible(state)
self.qlbYParts.setVisible(state)
self.qlbZParts.setVisible(state)
self.qsbXParts.setVisible(state)
self.qsbYParts.setVisible(state)
self.qsbZParts.setVisible(state)
def OnQpbCloseClicked(self):
self.close()
def saveOutputMesh(self):
if not self.qcbDisplayMesh.isChecked():
return True
import salome
import SMESH, SALOMEDS
from salome.smesh import smeshBuilder
smesh = smeshBuilder.New()
self.outputMesh.split('/')
for mesh in pathlib.Path(self.SALOME_TMP_DIR).glob('*.mesh'):
(outputMesh, status) = smesh.CreateMeshesFromGMF(os.path.join(self.SALOME_TMP_DIR, mesh))
if salome.sg.hasDesktop():
salome.sg.updateObjBrowser()
return True
__instance = None
def getInstance():
"""
This function returns a singleton instance of the plugin dialog.
It is mandatory in order to call show without a parent ...
"""
global __instance
if __instance is None:
__instance = TopIIVolMeshPluginDialog()
return __instance

474
src/Tools/TopIIVolMeshPlug/TopIIVolMeshPluginDialog.ui Normal file
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@ -0,0 +1,474 @@
<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>TopIIVolMeshMainFrame</class>
<widget class="QWidget" name="TopIIVolMeshMainFrame">
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>780</width>
<height>411</height>
</rect>
</property>
<property name="windowTitle">
<string>Tetra Mesh from cloud of xyz points mesh generator</string>
</property>
<widget class="QGroupBox" name="groupBox">
<property name="geometry">
<rect>
<x>10</x>
<y>10</y>
<width>761</width>
<height>101</height>
</rect>
</property>
<property name="font">
<font>
<pointsize>10</pointsize>
</font>
</property>
<property name="title">
<string>Input Mesh</string>
</property>
<widget class="QPushButton" name="qpbMeshFile">
<property name="geometry">
<rect>
<x>10</x>
<y>50</y>
<width>151</width>
<height>31</height>
</rect>
</property>
<property name="font">
<font>
<pointsize>10</pointsize>
</font>
</property>
<property name="text">
<string>DEM input file</string>
</property>
<property name="iconSize">
<size>
<width>18</width>
<height>18</height>
</size>
</property>
</widget>
<widget class="QLineEdit" name="qleMeshFile">
<property name="geometry">
<rect>
<x>170</x>
<y>50</y>
<width>531</width>
<height>31</height>
</rect>
</property>
<property name="font">
<font>
<pointsize>10</pointsize>
</font>
</property>
</widget>
</widget>
<widget class="QGroupBox" name="gbOptions">
<property name="geometry">
<rect>
<x>10</x>
<y>120</y>
<width>761</width>
<height>231</height>
</rect>
</property>
<property name="title">
<string>Options</string>
</property>
<widget class="QSpinBox" name="qsbXPoints">
<property name="geometry">
<rect>
<x>10</x>
<y>30</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>10</number>
</property>
</widget>
<widget class="QLabel" name="qlXpoints">
<property name="geometry">
<rect>
<x>80</x>
<y>30</y>
<width>201</width>
<height>20</height>
</rect>
</property>
<property name="text">
<string>Number of points in X direction</string>
</property>
</widget>
<widget class="QSpinBox" name="qsbYPoints">
<property name="geometry">
<rect>
<x>10</x>
<y>70</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>10</number>
</property>
</widget>
<widget class="QSpinBox" name="qsbZPoints">
<property name="geometry">
<rect>
<x>10</x>
<y>110</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>10</number>
</property>
</widget>
<widget class="QLabel" name="qlYpoints">
<property name="geometry">
<rect>
<x>80</x>
<y>70</y>
<width>211</width>
<height>20</height>
</rect>
</property>
<property name="text">
<string>Number of points in Y direction</string>
</property>
</widget>
<widget class="QLabel" name="qlZpoints">
<property name="geometry">
<rect>
<x>80</x>
<y>110</y>
<width>211</width>
<height>20</height>
</rect>
</property>
<property name="text">
<string>Number of points in Z direction</string>
</property>
</widget>
<widget class="QSpinBox" name="qsbDepth">
<property name="geometry">
<rect>
<x>10</x>
<y>150</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>-999999999</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>0</number>
</property>
</widget>
<widget class="QLabel" name="qlDepth">
<property name="geometry">
<rect>
<x>80</x>
<y>150</y>
<width>201</width>
<height>20</height>
</rect>
</property>
<property name="text">
<string>Depth in Z direction</string>
</property>
</widget>
<widget class="QCheckBox" name="qcbDistributed">
<property name="geometry">
<rect>
<x>630</x>
<y>30</y>
<width>91</width>
<height>21</height>
</rect>
</property>
<property name="text">
<string/>
</property>
</widget>
<widget class="QLabel" name="qlbNbProcs">
<property name="geometry">
<rect>
<x>370</x>
<y>30</y>
<width>151</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Number of processors</string>
</property>
</widget>
<widget class="QLabel" name="qlDistributed">
<property name="geometry">
<rect>
<x>660</x>
<y>30</y>
<width>101</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Distributed</string>
</property>
</widget>
<widget class="QLabel" name="qlbXParts">
<property name="geometry">
<rect>
<x>370</x>
<y>70</y>
<width>261</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Number of partitions in X direction</string>
</property>
</widget>
<widget class="QLabel" name="qlbYParts">
<property name="geometry">
<rect>
<x>370</x>
<y>110</y>
<width>251</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Number of partitions in Y direction</string>
</property>
</widget>
<widget class="QLabel" name="qlbZParts">
<property name="geometry">
<rect>
<x>370</x>
<y>150</y>
<width>251</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Number of partitions in Z direction</string>
</property>
</widget>
<widget class="QSpinBox" name="qsbNBprocs">
<property name="geometry">
<rect>
<x>300</x>
<y>30</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>1</number>
</property>
</widget>
<widget class="QSpinBox" name="qsbXParts">
<property name="geometry">
<rect>
<x>300</x>
<y>70</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>1</number>
</property>
</widget>
<widget class="QSpinBox" name="qsbYParts">
<property name="geometry">
<rect>
<x>300</x>
<y>110</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>1</number>
</property>
</widget>
<widget class="QSpinBox" name="qsbZParts">
<property name="geometry">
<rect>
<x>300</x>
<y>150</y>
<width>62</width>
<height>22</height>
</rect>
</property>
<property name="minimum">
<number>0</number>
</property>
<property name="maximum">
<number>999999999</number>
</property>
<property name="value">
<number>1</number>
</property>
</widget>
<widget class="QLineEdit" name="qleTmpDir">
<property name="geometry">
<rect>
<x>10</x>
<y>200</y>
<width>611</width>
<height>23</height>
</rect>
</property>
<property name="text">
<string/>
</property>
</widget>
<widget class="QLabel" name="qlTmpDir">
<property name="geometry">
<rect>
<x>10</x>
<y>180</y>
<width>391</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Workspace</string>
</property>
</widget>
<widget class="QCheckBox" name="qcbDisplayMesh">
<property name="geometry">
<rect>
<x>630</x>
<y>70</y>
<width>91</width>
<height>21</height>
</rect>
</property>
<property name="text">
<string/>
</property>
</widget>
<widget class="QLabel" name="qlDisplayMesh">
<property name="geometry">
<rect>
<x>660</x>
<y>70</y>
<width>101</width>
<height>16</height>
</rect>
</property>
<property name="text">
<string>Display mesh</string>
</property>
</widget>
</widget>
<widget class="QWidget" name="layoutWidget">
<property name="geometry">
<rect>
<x>10</x>
<y>370</y>
<width>761</width>
<height>27</height>
</rect>
</property>
<layout class="QHBoxLayout" name="horizontalLayout">
<item>
<widget class="QPushButton" name="qpbCompute">
<property name="text">
<string>Compute</string>
</property>
</widget>
</item>
<item>
<widget class="QPushButton" name="qpbClose">
<property name="text">
<string>Close</string>
</property>
</widget>
</item>
<item>
<spacer name="horizontalSpacer">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>40</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item>
<widget class="QPushButton" name="qpbHelp">
<property name="font">
<font>
<pointsize>10</pointsize>
</font>
</property>
<property name="text">
<string>Help</string>
</property>
</widget>
</item>
</layout>
</widget>
</widget>
<resources/>
<connections/>
</ui>

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src/Tools/TopIIVolMeshPlug/TopIIVolMeshPlugin_plugin.py Normal file
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# -*- coding: utf-8 -*-
# Copyright (C) 2013-2020 EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
# if you already have plugins defined in a salome_plugins.py file, add this file at the end.
# if not, copy this file as ${HOME}/Plugins/smesh_plugins.py or ${APPLI}/Plugins/smesh_plugins.py
def TopIIVolMeshLct(context):
# get context study, salomeGui
study = context.study
sg = context.sg
import os
import subprocess
import tempfile
from qtsalome import QFileDialog, QMessageBox
import TopIIVolMeshPluginDialog
window = TopIIVolMeshPluginDialog.getDialog()
window.show()

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# Copyright (C) 2012-2021 CEA
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
#
SALOME_CONFIGURE_FILE(conf.py.in conf.py)
SET(_cmd_options -c ${CMAKE_CURRENT_BINARY_DIR} -b html -d doctrees ${CMAKE_CURRENT_SOURCE_DIR} docutils)
SALOME_GENERATE_ENVIRONMENT_SCRIPT(_cmd env_script "${SPHINX_EXECUTABLE}" "${_cmd_options}" CONTEXT TopIIVolMeshPlug_DOC)
ADD_CUSTOM_TARGET(html_docs_TopIIVolMeshPlug COMMAND ${_cmd})
INSTALL(CODE "EXECUTE_PROCESS(COMMAND \"${CMAKE_COMMAND}\" --build ${PROJECT_BINARY_DIR} --target html_docs_TopIIVolMeshPlug)")
INSTALL(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/docutils/ DESTINATION ${SALOME_INSTALL_DOC}/gui/SMESH/TopIIVolMesh)
SET(make_clean_files docutils doctrees)
SET_DIRECTORY_PROPERTIES(PROPERTIES ADDITIONAL_MAKE_CLEAN_FILES "${make_clean_files}")

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Introduction
============
**topIIvol** meshing tool provides sequential/parallel tools for creating volumetric tetrahedral meshes from a given topology (point-cloud `*.xyz`).
Running topIIvol Plug-in
========================
**topIIVolMesh** plug-in can be invoked via SMESH Plugin item in Mesh menu bar
.. image:: images/callTopIIVolMesh.png
:align: center
**topIIVolMesh** Options
========================
Sequential mode
---------------
If the number of processors is set to 1, **topIIvol_Mesher** sequential tool is called for creating volumetric tetrahedral meshes from a given topology. The volumetric mesh can be displayed in SALOME by ticking the "Display mesh" check-box.
The list of input parameters are:
- DEM input file: input point cloud file;
- Number of X points present in the input point cloud;
- Number of Y points present in the input point cloud;
- Number of Z points intended in the z direction;
- Depth of the mesh needed;
- temporary directory for calculation.
Parallel mode
---------------
If the number of processors is greater than one, **topIIvol_ParMesher** parallel computing tool is called for creating volumetric tetrahedral meshes from a given topology. The volumetric mesh can be displayed in SALOME by ticking the "Display mesh" check-box.
The list of input parameters are:
- DEM input file: input point cloud file;
- Number of X points present in the input point cloud;
- Number of Y points present in the input point cloud;
- Number of Z points intended in the z direction;
- Depth of the mesh needed;
- Number of MPI ranks
- temporary directory for calculation.
Distributed mode
-----------------
If the check-box **Distributed** is ticked, **topIIvol_DistMesher** computing tool is called for creating embarassingly parallel distributed meshes from a given topology.
The list of input parameters are:
- DEM input file: input point cloud file;
- Number of X points present in the input point cloud;
- Number of Y points present in the input point cloud;
- Number of Z points intended in the z direction;
- Number of partitions in X direction;
- Number of partitions in Y direction;
- Number of partitions in Z direction;
- Depth of the mesh needed;
- Number of MPI ranks
- temporary directory for calculation.

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# -*- coding: utf-8 -*-
#
# TopIIVolMesh PlugIn documentation build configuration file
#
import sys, os
import sphinx
# If your extensions are in another directory, add it here. If the directory
# is relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
#sys.path.append(os.path.abspath('some/directory'))
# General configuration
# ---------------------
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = ['sphinx.ext.autodoc']
try:
import sphinx_rtd_theme
extensions += ['sphinx_rtd_theme']
use_rtd_theme = True
except:
use_rtd_theme = False
# Add any paths that contain templates here, relative to this directory.
templates_path = ['.templates']
# The suffix of source filenames.
source_suffix = '.rst'
# The master toctree document.
master_doc = 'index'
# General substitutions.
project = 'topIIvol Plug-in'
copyright = '2007-2021 CEA'
# The default replacements for |version| and |release|, also used in various
# other places throughout the built documents.
#
# The short X.Y version.
version = '@SALOMESMESH_VERSION@'
# The full version, including alpha/beta/rc tags.
release = '@SALOMESMESH_VERSION@'
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'
# List of documents that shouldn't be included in the build.
#unused_docs = []
# List of directories, relative to source directories, that shouldn't be searched
# for source files.
#exclude_dirs = []
# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# Options for HTML output
# -----------------------
# The theme to use for HTML and HTML Help pages. Major themes that come with
# Sphinx are currently 'default' and 'sphinxdoc'.
if use_rtd_theme:
html_theme = 'sphinx_rtd_theme'
else:
html_theme = 'default' if sphinx.version_info[:2] < (1,3) else 'classic'
themes_options = {}
themes_options['classic'] = {
'body_max_width':'none',
'body_min_width':0,
}
html_theme_options = themes_options.get(html_theme, {})
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
#html_short_title = None
# The name of an image file (within the static path) to place at the top of
# the sidebar.
#html_logo = None
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
#html_static_path = ['.static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'
# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True
# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}
# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}
# If false, no module index is generated.
#html_use_modindex = True
# If false, no index is generated.
#html_use_index = True
# If true, the index is split into individual pages for each letter.
#html_split_index = False
# If true, the reST sources are included in the HTML build as _sources/<name>.
#html_copy_source = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''
# If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = ''
# Output file base name for HTML help builder.
htmlhelp_basename = 'TopIIVolMeshPlug-in doc'
# Options for LaTeX output
# ------------------------
# The paper size ('letter' or 'a4').
#latex_paper_size = 'letter'
# The font size ('10pt', '11pt' or '12pt').
#latex_font_size = '10pt'
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, document class [howto/manual]).
latex_documents = [
('index', 'TopIIVolMeshPlugIn.tex', 'TopIIVolMesh PlugIn Documentation',
'CEA', 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False
# Additional stuff for the LaTeX preamble.
#latex_preamble = ''
# Documents to append as an appendix to all manuals.
#latex_appendices = []
# If false, no module index is generated.
#latex_use_modindex = True

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.. TopIIVolMesh documentation master file, created by sphinx-quickstart.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
topIIvol plugin documentation
=====================================
This documentation covers the usage of **top-ii-vol** as plug-in in SALOME that can be used within the SALOME
Mesh module.
TopIIVolMesh plug-in uses CEA **top-ii-Vol** meshing tool,which provides sequential/parallel tools for creating volumetric tetrahedral meshes from a given topology.
This plug-in offers only the most common functionalities of the tool.
Contents:
.. toctree::
:maxdepth: 2
TopIIVolMesh.rst

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src/Tools/smesh_plugins.py
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@ -91,3 +91,14 @@ except Exception as e:
#print 'probleme zcracks' #print 'probleme zcracks'
salome_pluginsmanager.logger.info('ERROR: Zcrack plug-in is unavailable: {}'.format(e)) salome_pluginsmanager.logger.info('ERROR: Zcrack plug-in is unavailable: {}'.format(e))
pass pass
# Topological to volumic mesh plugin
try:
from TopIIVolMeshPlugin import TopIIVolMeshLct
salome_pluginsmanager.AddFunction('Run Topological Volumic mesher',
'run topological volumic mesher',
TopIIVolMeshLct)
except Exception as e:
#print 'probleme zcracks'
salome_pluginsmanager.logger.info('ERROR: TopIIVolMesh plug-in is unavailable: {}'.format(e))
pass