mirror of
https://git.salome-platform.org/gitpub/modules/smesh.git
synced 2024-09-22 10:42:52 +05:00
Adding code for Python parallel mesh with test + removing nbMesherThreads
This commit is contained in:
Yoann Audouin
parent
710bfb39c4
commit
effd6e2229
@ -905,11 +905,6 @@ module SMESH
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void SetNbThreads(in long nbThreads);
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/*!
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* \brief Set Number of Threads for mesher
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*/
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void SetMesherNbThreads(in long nbThreads);
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/*!
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* Get mesh description
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*/
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@ -279,7 +279,7 @@ bool SMESH_Gen::parallelComputeSubMeshes(
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TopAbs_ShapeEnum previousShapeType = TopAbs_VERTEX;
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int nbThreads = aMesh.GetNbThreads();
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MESSAGE("Compute submeshes with threads: " << nbThreads << " mesher: " << aMesh.GetMesherNbThreads());
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MESSAGE("Compute submeshes with threads: " << nbThreads);
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smIt = shapeSM->getDependsOnIterator(includeSelf, !complexShapeFirst);
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@ -87,7 +87,7 @@ namespace fs=boost::filesystem;
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#define MAX_MED_GROUP_NAME_LENGTH 80
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#ifdef _DEBUG_
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static int MYDEBUG = 1;
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static int MYDEBUG = 0;
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#else
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static int MYDEBUG = 0;
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#endif
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@ -392,9 +392,6 @@ class SMESH_EXPORT SMESH_Mesh
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int GetNbThreads(){return _NbThreads;};
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void SetNbThreads(int nbThreads){_NbThreads=nbThreads;};
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int GetMesherNbThreads(){return _MesherNbThreads;};
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void SetMesherNbThreads(int nbThreads){_MesherNbThreads=nbThreads;};
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void InitPoolThreads(){_pool = new boost::asio::thread_pool(_NbThreads);};
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void DeletePoolThreads(){delete _pool;};
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@ -456,7 +453,6 @@ protected:
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// Mutex for multhitreading write in SMESH_Mesh
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std::mutex _my_lock;
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int _NbThreads=0;
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int _MesherNbThreads=0;
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protected:
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SMESH_Mesh();
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@ -2213,7 +2213,7 @@ bool _pyMesh::NeedMeshAccess( const Handle(_pyCommand)& theCommand )
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"GetElemFaceNodes", "GetFaceNormal", "FindElementByNodes",
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"IsPoly","IsQuadratic","BaryCenter","GetHypothesisList", "SetAutoColor", "GetAutoColor",
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"Clear", "ConvertToStandalone", "GetMeshOrder", "SetMeshOrder",
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"SetNbThreads", "SetMesherNbThreads"
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"SetNbThreads"
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,"" }; // <- mark of end
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sameMethods.Insert( names );
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}
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@ -7046,15 +7046,6 @@ void SMESH_Mesh_i::SetNbThreads(int nbThreads){
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_impl->SetNbThreads(nbThreads);
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}
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//=============================================================================
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/*!
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* \brief Set the number of threads for the mesher for a parallel computation
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*/
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//=============================================================================
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void SMESH_Mesh_i::SetMesherNbThreads(int nbThreads){
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_impl->SetMesherNbThreads(nbThreads);
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}
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//=============================================================================
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/*!
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@ -462,6 +462,21 @@ class smeshBuilder( SMESH._objref_SMESH_Gen, object ):
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obj,name = name,obj
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return Mesh(self, self.geompyD, obj, name)
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def ParallelMesh(self, obj, param, nbThreads, name=0):
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"""
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Create a parallel mesh.
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Parameters:
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obj: geometrical object for meshing
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name: the name for the new mesh.
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param: full mesh parameters
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nbThreads: Number of threads for parallelisation.
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Returns:
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an instance of class :class:`ParallelMesh`.
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"""
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return ParallelMesh(self, self.geompyD, obj, param, nbThreads, name)
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def RemoveMesh( self, mesh ):
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"""
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Delete a mesh
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@ -1863,31 +1878,6 @@ class Mesh(metaclass = MeshMeta):
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geom = self.geom
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return self.smeshpyD.Evaluate(self.mesh, geom)
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def ParallelCompute(self, nbThreads, mesherNbThreads=1, geom=0, discardModifs=False, refresh=False):
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"""
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Parallel computation of the mesh and return the status of the computation
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The mesh must contains have be constructed using create_parallel_mesh
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Parameters:
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nbThreads: Number of threads to use for a parallel computation
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geom: geomtrical shape on which mesh data should be computed
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discardModifs: if True and the mesh has been edited since
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a last total re-compute and that may prevent successful partial re-compute,
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then the mesh is cleaned before Compute()
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refresh: if *True*, Object Browser is automatically updated (when running in GUI)
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Returns:
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True or False
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"""
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if (nbThreads <= 1):
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raise ValueError("nbThreads must be strictly greater than 1")
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if (mesherNbThreads < 1):
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raise ValueError("nbThreads must be greater than 1")
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self.mesh.SetMesherNbThreads(mesherNbThreads)
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self.mesh.SetNbThreads(nbThreads)
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return self.Compute(geom=geom, discardModifs=discardModifs, refresh=refresh)
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def Compute(self, geom=0, discardModifs=False, refresh=False):
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"""
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Compute the mesh and return the status of the computation
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@ -7511,6 +7501,121 @@ class Mesh(metaclass = MeshMeta):
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pass # end of Mesh class
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def _copy_netgen_param(dim, local_param, global_param):
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if dim==1:
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#TODO: Try to identify why we need to substract 1
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local_param.NumberOfSegments(int(global_param.GetNbSegPerEdge())-1)
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elif dim==2:
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local_param.SetMaxSize(global_param.GetMaxSize())
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local_param.SetMinSize(global_param.GetMinSize())
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local_param.SetOptimize(global_param.GetOptimize())
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local_param.SetFineness(global_param.GetFineness())
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local_param.SetNbSegPerEdge(global_param.GetNbSegPerEdge())
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local_param.SetNbSegPerRadius(global_param.GetNbSegPerRadius())
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local_param.SetGrowthRate(global_param.GetGrowthRate()*0.9)
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local_param.SetChordalError(global_param.GetChordalError())
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local_param.SetChordalErrorEnabled(global_param.GetChordalErrorEnabled())
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local_param.SetUseSurfaceCurvature(global_param.GetUseSurfaceCurvature())
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local_param.SetUseDelauney(global_param.GetUseDelauney())
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local_param.SetQuadAllowed(global_param.GetQuadAllowed())
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local_param.SetWorstElemMeasure(global_param.GetWorstElemMeasure())
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local_param.SetCheckChartBoundary(global_param.GetCheckChartBoundary())
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local_param.SetNbThreads(global_param.GetNbThreads())
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else:
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local_param.SetMaxSize(global_param.GetMaxSize())
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local_param.SetMinSize(global_param.GetMinSize())
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local_param.SetOptimize(global_param.GetOptimize())
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local_param.SetCheckOverlapping(global_param.GetCheckOverlapping())
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local_param.SetCheckChartBoundary(global_param.GetCheckChartBoundary())
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local_param.SetFineness(global_param.GetFineness())
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local_param.SetNbSegPerEdge(global_param.GetNbSegPerEdge())
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local_param.SetNbSegPerRadius(global_param.GetNbSegPerRadius())
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local_param.SetGrowthRate(global_param.GetGrowthRate())
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local_param.SetNbThreads(global_param.GetNbThreads())
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class ParallelMesh(Mesh):
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"""
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Surcharge on Mesh for parallel computation of a mesh
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"""
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def __init__(self, smeshpyD, geompyD, geom, param, nbThreads, name=0):
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"""
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Create a parallel mesh.
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Parameters:
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geom: geometrical object for meshing
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param: full mesh parameters
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nbThreads: Number of threads for parallelisation.
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name: the name for the new mesh.
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Returns:
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an instance of class :class:`ParallelMesh`.
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"""
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if not isinstance(geom, geomBuilder.GEOM._objref_GEOM_Object):
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raise ValueError("geom argument must be a geometry")
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if not isinstance(param, NETGENPlugin._objref_NETGENPlugin_Hypothesis):
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raise ValueError("param must come from NETGENPlugin")
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if nbThreads < 1:
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raise ValueError("Number of threads must be stricly greater than 1")
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# Splitting geometry into 3D elements and all the 2D/1D into one compound
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object_solids = geompyD.ExtractShapes(geom, geompyD.ShapeType["SOLID"],
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True)
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solids = []
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isolid = 0
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for solid in object_solids:
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isolid += 1
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geompyD.addToStudyInFather( geom, solid, 'Solid_{}'.format(isolid) )
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solids.append(solid)
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faces = []
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iface = 0
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for isolid, solid in enumerate(solids):
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solid_faces = geompyD.ExtractShapes(solid, geompyD.ShapeType["FACE"],
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True)
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for face in solid_faces:
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faces.append(face)
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iface += 1
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geompyD.addToStudyInFather(solid, face,
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'Face_{}'.format(iface))
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# Creating submesh for edges 1D/2D part
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all_faces = geompyD.MakeCompound(faces)
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geompyD.addToStudy(all_faces, 'Compound_1')
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all_faces = geompyD.MakeGlueEdges(all_faces, 1e-07)
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all_faces = geompyD.MakeGlueFaces(all_faces, 1e-07)
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geompyD.addToStudy(all_faces, 'global2D')
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super(ParallelMesh, self).__init__(smeshpyD, geompyD, geom, name)
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self.mesh.SetNbThreads(nbThreads)
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self.UseExistingSegments()
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self.UseExistingFaces()
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algo2d = self.Triangle(geom=all_faces, algo="NETGEN_2D")
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param2d = algo2d.Parameters()
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_copy_netgen_param(2, param2d, param)
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for solid_id, solid in enumerate(solids):
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name = "Solid_{}".format(solid_id)
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self.UseExistingSegments(geom=solid)
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self.UseExistingFaces(geom=solid)
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algo3d = self.Tetrahedron(geom=solid, algo="NETGEN_3D_Remote")
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param3d = algo3d.Parameters()
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_copy_netgen_param(3, param3d, param)
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pass # End of ParallelMesh
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class meshProxy(SMESH._objref_SMESH_Mesh):
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"""
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Private class used to compensate change of CORBA API of SMESH_Mesh for backward compatibility
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131
test/SMESH_ParallelCompute.py
Normal file
131
test/SMESH_ParallelCompute.py
Normal file
@ -0,0 +1,131 @@
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# contains function to compute a mesh in parallel
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from platform import java_ver
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import sys
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from tkinter import W
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import salome
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import time
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salome.salome_init()
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import salome_notebook
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notebook = salome_notebook.NoteBook()
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###
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### GEOM component
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###
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import GEOM
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from salome.geom import geomBuilder
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from salome.smesh import smeshBuilder
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import math
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import SALOMEDS
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import numpy as np
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geompy = geomBuilder.New()
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smesh = smeshBuilder.New()
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def build_seq_mesh(nbox, boxsize, offset):
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# Create 3D faces
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boxes = []
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# First creating all the boxes
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for i in range(nbox):
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for j in range(nbox):
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for k in range(nbox):
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x_orig = i*(boxsize+offset)
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y_orig = j*(boxsize+offset)
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z_orig = k*(boxsize+offset)
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tmp_box = geompy.MakeBoxDXDYDZ(boxsize, boxsize, boxsize)
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if not i == j == k == 0:
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box = geompy.MakeTranslation(tmp_box, x_orig,
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y_orig, z_orig)
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else:
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box = tmp_box
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geompy.addToStudy(box, 'box_{}:{}:{}'.format(i, j, k))
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boxes.append(box)
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# Create fuse of all boxes
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all_boxes = geompy.MakeCompound(boxes)
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geompy.addToStudy(all_boxes, 'Compound_1')
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# Removing duplicates faces and edges
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all_boxes = geompy.MakeGlueFaces(all_boxes, 1e-07)
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geompy.addToStudy(all_boxes, 'Glued_Faces_1')
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all_boxes = geompy.MakeGlueEdges(all_boxes, 1e-07)
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geompy.addToStudy(all_boxes, 'rubik_cube')
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# Building sequetial mesh
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print("Creating mesh")
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all_box_mesh = smesh.Mesh(all_boxes, "seq_mesh")
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print("Adding algo")
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algo3d = all_box_mesh.Tetrahedron(algo=smeshBuilder.NETGEN_1D2D3D)
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netgen_parameters = algo3d.Parameters()
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netgen_parameters.SetMaxSize(34.641)
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netgen_parameters.SetMinSize(0.141421)
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netgen_parameters.SetOptimize(1)
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netgen_parameters.SetCheckOverlapping(0)
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netgen_parameters.SetCheckChartBoundary(0)
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netgen_parameters.SetFineness(5)
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netgen_parameters.SetNbSegPerEdge(16*(boxsize//100))
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netgen_parameters.SetNbSegPerRadius(1.5)
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netgen_parameters.SetGrowthRate(0.15)
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netgen_parameters.SetChordalError(-1)
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netgen_parameters.SetChordalErrorEnabled(0)
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netgen_parameters.SetUseSurfaceCurvature(1)
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netgen_parameters.SetQuadAllowed(0)
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netgen_parameters.SetCheckOverlapping(False)
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netgen_parameters.SetNbThreads(2)
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return all_boxes, all_box_mesh, netgen_parameters
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def run_test(nbox=2, boxsize=100):
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""" Run sequential mesh and parallel version of it
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nbox: NUmber of boxes
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boxsize: Size of each box
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"""
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geom, seq_mesh, netgen_parameters = build_seq_mesh(nbox, boxsize, 0)
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par_mesh = smesh.ParallelMesh(geom, netgen_parameters, 6, name="par_mesh")
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start = time.monotonic()
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is_done = seq_mesh.Compute()
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assert is_done
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stop = time.monotonic()
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time_seq = stop-start
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start = time.monotonic()
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is_done = par_mesh.Compute()
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assert is_done
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stop = time.monotonic()
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time_par = stop-start
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print(" Tetrahedron: ", seq_mesh.NbTetras(), par_mesh.NbTetras())
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print(" Triangle: ", seq_mesh.NbTriangles(), par_mesh.NbTriangles())
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print(" edge: ", seq_mesh.NbEdges(), par_mesh.NbEdges())
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assert par_mesh.NbTetras() > 0
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assert par_mesh.NbTriangles() > 0
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assert par_mesh.NbEdges() > 0
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print("Time elapsed (seq, par): ", time_seq, time_par)
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def main():
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nbox = 2
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boxsize = 100
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run_test(nbox, boxsize)
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main()
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@ -22,7 +22,7 @@ import medcoupling as mc
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def create_param_file(param_file):
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""" Create a parameter file for runner """
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param="""1
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param = """1
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34.64
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0.14
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16
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@ -43,8 +43,10 @@ def create_param_file(param_file):
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0
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0
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2
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2
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0
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0
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0
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0"""
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with open(param_file, "w") as ffile:
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@ -57,69 +59,71 @@ def test_netgen3d():
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box = geompy.MakeBoxDXDYDZ(200, 200, 200)
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geompy.ExtractShapes(box, geompy.ShapeType["FACE"], True)
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Groupe_1 = geompy.CreateGroup(box, geompy.ShapeType["FACE"])
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geompy.UnionIDs(Groupe_1, [3, 13, 23, 27, 31, 33])
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groupe_1 = geompy.CreateGroup(box, geompy.ShapeType["FACE"])
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geompy.UnionIDs(groupe_1, [3, 13, 23, 27, 31, 33])
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# TODO: useful ?
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[_, _, _, _, _, _, Groupe_1] = geompy.GetExistingSubObjects(box, False)
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[_, _, _, _, _, _, groupe_1] = geompy.GetExistingSubObjects(box, False)
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# Creating 2D mesh
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NETGEN_2D_Parameters_1 = smesh.CreateHypothesisByAverageLength(
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netgen_2d_parameters_1 = smesh.CreateHypothesisByAverageLength(
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'NETGEN_Parameters_2D', 'NETGENEngine', 34.641, 0)
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Mesh2D = smesh.Mesh(Groupe_1, 'Maillage_1')
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status = Mesh2D.AddHypothesis(Groupe_1, NETGEN_2D_Parameters_1)
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NETGEN_1D_2D = Mesh2D.Triangle(algo=smeshBuilder.NETGEN_1D2D)
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isDone = Mesh2D.Compute()
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smesh.SetName(Mesh2D, 'Maillage_1')
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mesh_2d = smesh.Mesh(groupe_1, 'Maillage_1')
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mesh_2d.AddHypothesis(groupe_1, netgen_2d_parameters_1)
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mesh_2d.Triangle(algo=smeshBuilder.NETGEN_1D2D)
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is_done = mesh_2d.Compute()
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assert is_done
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smesh.SetName(mesh_2d, 'Maillage_1')
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# tmp_dir = tempfile.mkdtemp()
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with tempfile.TemporaryDirectory() as tmp_dir:
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mesh_file = path.join(tmp_dir, "mesh.med")
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shape_file = path.join(tmp_dir, "shape.step")
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param_file = path.join(tmp_dir, "param.txt")
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output_mesh = path.join(tmp_dir, "mesh3D.med")
|
||||
mesh_file = path.join(tmp_dir, "mesh.med")
|
||||
shape_file = path.join(tmp_dir, "shape.step")
|
||||
param_file = path.join(tmp_dir, "param.txt")
|
||||
output_mesh = path.join(tmp_dir, "mesh3D.med")
|
||||
|
||||
print("Running in folder: ", tmp_dir)
|
||||
create_param_file(param_file)
|
||||
print("Running in folder: ", tmp_dir)
|
||||
create_param_file(param_file)
|
||||
|
||||
Mesh2D.ExportMED(mesh_file, 0, 41, 1, Mesh2D, 1, [], '', -1, 1)
|
||||
geompy.ExportSTEP(box, shape_file, GEOM.LU_METER)
|
||||
mesh_2d.ExportMED(mesh_file, 0, 41, 1, mesh_2d, 1, [], '', -1, 1)
|
||||
geompy.ExportSTEP(box, shape_file, GEOM.LU_METER)
|
||||
|
||||
runner = path.join("${NETGENPLUGIN_ROOT_DIR}",
|
||||
"bin",
|
||||
"salome",
|
||||
"NETGENPlugin_Runner")
|
||||
runner = path.join("${NETGENPLUGIN_ROOT_DIR}",
|
||||
"bin",
|
||||
"salome",
|
||||
"NETGENPlugin_Runner")
|
||||
|
||||
cmd = "{runner} NETGEN3D {mesh_file} {shape_file} "\
|
||||
"{param_file} NONE 2 NONE {output_mesh}"\
|
||||
.format(runner=runner,
|
||||
mesh_file=mesh_file,
|
||||
shape_file=shape_file,
|
||||
param_file=param_file,
|
||||
output_mesh=output_mesh)
|
||||
print(cmd)
|
||||
subprocess.check_call(cmd, shell=True)
|
||||
if sys.platform == 'win32':
|
||||
runner += ".exe"
|
||||
|
||||
meshRead = mc.ReadUMeshFromFile (output_mesh, "MESH", 0)
|
||||
cmd = "{runner} NETGEN3D {mesh_file} {shape_file} "\
|
||||
"{param_file} NONE NONE {output_mesh}"\
|
||||
.format(runner=runner,
|
||||
mesh_file=mesh_file,
|
||||
shape_file=shape_file,
|
||||
param_file=param_file,
|
||||
output_mesh=output_mesh)
|
||||
print(cmd)
|
||||
subprocess.check_call(cmd, shell=True)
|
||||
|
||||
nbTetras = meshRead.getNumberOfCellsWithType(mc.NORM_TETRA4)
|
||||
nbPoints = meshRead.getNumberOfNodes()
|
||||
mesh_read = mc.ReadUMeshFromFile(output_mesh, "MESH", 0)
|
||||
|
||||
meshRead = mc.ReadUMeshFromFile (output_mesh, "MESH", -1)
|
||||
nbTriangles = meshRead.getNumberOfCellsWithType(mc.NORM_TRI3)
|
||||
nb_tetras = mesh_read.getNumberOfCellsWithType(mc.NORM_TETRA4)
|
||||
nb_points = mesh_read.getNumberOfNodes()
|
||||
|
||||
meshRead = mc.ReadUMeshFromFile (output_mesh, "MESH", -2)
|
||||
nbSegments = meshRead.getNumberOfCellsWithType(mc.NORM_SEG2)
|
||||
mesh_read = mc.ReadUMeshFromFile(output_mesh, "MESH", -1)
|
||||
nb_triangles = mesh_read.getNumberOfCellsWithType(mc.NORM_TRI3)
|
||||
|
||||
print("Nb Tetras:", nbTetras)
|
||||
print("Nb Triangles:", nbTriangles)
|
||||
print("Nb Segments:", nbSegments)
|
||||
print("Nb Points:", nbPoints)
|
||||
mesh_read = mc.ReadUMeshFromFile(output_mesh, "MESH", -2)
|
||||
nb_segments = mesh_read.getNumberOfCellsWithType(mc.NORM_SEG2)
|
||||
|
||||
assert(nbPoints > 0)
|
||||
assert(nbSegments > 0)
|
||||
assert(nbTriangles > 0)
|
||||
assert(nbTetras > 0)
|
||||
print("Nb Tetras:", nb_tetras)
|
||||
print("Nb Triangles:", nb_triangles)
|
||||
print("Nb Segments:", nb_segments)
|
||||
print("Nb Points:", nb_points)
|
||||
|
||||
assert nb_points > 0
|
||||
assert nb_segments > 0
|
||||
assert nb_triangles > 0
|
||||
assert nb_tetras > 0
|
||||
|
||||
if __name__ == "__main__":
|
||||
test_netgen3d()
|
||||
|
||||
@ -64,6 +64,7 @@ SET(BAD_TESTS
|
||||
SMESH_test4.py
|
||||
SMESH_create_dual_mesh_adapt.py
|
||||
netgen_runner.py
|
||||
SMESH_ParallelCompute.py
|
||||
)
|
||||
IF(NOT WIN32)
|
||||
LIST(APPEND BAD_TESTS
|
||||
|
||||
Loading…
Reference in New Issue
Block a user