Mod: everything for db
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c2a6303f17
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39db5447c9
@ -110,10 +110,12 @@ def timer(func):
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class Anisotropy(object):
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def __init__(self):
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self.db = self._setupDB()
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self.env = env
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self.db = None
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self.params = []
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self.evalParameters(env)
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#self.evalParameters(env)
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self.setupDB()
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@staticmethod
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def version():
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@ -133,19 +135,17 @@ class Anisotropy(object):
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return "\n".join([ f"{ k }: { v }" for k, v in versions.items() ])
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@staticmethod
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def _setupDB():
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db.init(env["db_path"])
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def setupDB(self):
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self.db = db.init(self.env["db_path"])
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if not os.path.exists(env["db_path"]):
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db.create_tables([Structure, Mesh])
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if not os.path.exists(self.env["db_path"]):
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self.db.create_tables([Structure, Mesh])
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return db
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def evalParameters(self, _env: dict):
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def evalEnvParameters(self):
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""" 'Uncompress' and eval environment parameters """
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from math import sqrt
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structures = deepcopy(_env["structures"])
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structures = deepcopy(self.env["structures"])
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for structure in structures:
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_theta = structure["geometry"]["theta"]
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@ -195,7 +195,7 @@ class Anisotropy(object):
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path = os.path.join(
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_env["BUILD"],
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self.env["BUILD"],
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structure["name"],
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f"direction-{ direction }",
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f"theta-{ theta }"
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@ -214,16 +214,25 @@ class Anisotropy(object):
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mesh.update(
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thickness = thicknessList[n]
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)
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self.params.append({
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"name": structure["name"],
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"path": path,
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"geometry": geometry,
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"mesh": mesh,
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"submesh": deepcopy(structure["submesh"])
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})
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self.params.append(dict(
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name = structure["name"],
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path = path,
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geometry = geometry,
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mesh = mesh,
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submesh = deepcopy(structure["submesh"])
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))
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def getParams(structure, direction, theta):
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for entry in self.params:
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if entry["name"] == structure and
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entry["geometry"]["direction"] == direction and
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entry["geometry"]["theta"] == theta:
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return entry
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# SELECT * FROM structure LEFT OUTER JOIN mesh ON mesh.structure_id = structure.id WHERE name = "faceCentered" AND direction = "[1, 1, 1]" AND theta = 0.12;
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# Structure.select().join(Mesh, JOIN.LEFT_OUTER, on = (Mesh.structure_id == Structure.id)).where(Structure.name == "simple", Structure.direction == "[1, 0, 0]", Structure.theta == 0.13).dicts().get()
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@timer
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def updateDB(self):
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for entry in self.params:
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query = (Structure
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@ -251,12 +260,38 @@ class Anisotropy(object):
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mtab = Mesh.create(**m)
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else:
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# TODO: not working update; incorrect update (all entries)
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with self.db.atomic():
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stab = Structure.update(**s)
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(Structure.update(**s)
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.where(
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Structure.name == entry["name"],
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Structure.direction == str(entry["geometry"]["direction"]),
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Structure.theta == entry["geometry"]["theta"]
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)
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.execute())
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m.update(structure_id = stab)
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mtab = Mesh.update(**m)
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(Mesh.update(**m)
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.where(
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Mesh.structure_id == query.get().id
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)
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.execute())
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@timer
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def updateFromDB(self):
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squery = Structure.select().order_by(Structure.id)
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mquery = Mesh.select().order_by(Mesh.structure_id)
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for s, m in zip(squery.dicts(), mquery.dicts()):
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name = s.pop("name")
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path = s.pop("path")
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self.params.append(dict(
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name = name,
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path = path,
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geometry = s,
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mesh = m
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))
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self.params = sorted(self.params, key = lambda entry: f"{ entry['name'] } { entry['geometry']['direction'] } { entry['geometry']['theta'] }")
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@timer
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def computeMesh(self):
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@ -17,7 +17,7 @@ class ListField(Field):
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pass
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finally:
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pval.append(ch.strip())
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pval.append(ch.strip().replace("'", ""))
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return pval
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@ -34,7 +34,7 @@ class BaseModel(Model):
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class Structure(BaseModel):
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name = TextField()
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direction = TextField()
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direction = ListField()
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theta = FloatField()
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r0 = FloatField()
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@ -2,115 +2,159 @@
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# This file executes inside salome environment
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#
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# salome starts at user home directory
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#
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# sys.argv = [ .., ROOT, case ]
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##
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import os, sys
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import math
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import salome
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# get project path from args
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ROOT = sys.argv[1]
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CASE = sys.argv[2]
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sys.path.append(ROOT)
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# site-packages from virtual env
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sys.path.append(os.path.join(ROOT, "env/lib/python3.9/site-packages"))
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import toml
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import logging
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from anisotropy.utils import struct
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from salomepl.simple import simple
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from salomepl.faceCentered import faceCentered
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from salomepl.bodyCentered import bodyCentered
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from salomepl.geometry import getGeom
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from salomepl.mesh import Mesh, Fineness, ExtrusionMethod, defaultParameters
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@click.command()
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@click.argument("root")
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@click.argument("name")
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@click.argument("direction")
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@click.argument("theta", type = click.FLOAT)
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def genmesh(root, name, direction, theta):
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###
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# Args
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##
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direction = list(map(lambda num: float(num), direction[1:-1].split(",")))
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def genmesh(config):
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###
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# Modules
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##
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sys.path.extend([
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root,
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os.path.join(root, "env/lib/python3.9/site-packages")
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])
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logger.info(f"""genmesh:
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structure type:\t{ config.structure }
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coefficient:\t{ config.geometry.theta }
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fillet:\t{ config.geometry.fillet }
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flow direction:\t{ config.geometry.direction }""")
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import logging
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import click
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from anisotropy import Anisotropy
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from salomepl.simple import simple
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from salomepl.faceCentered import faceCentered
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from salomepl.bodyCentered import bodyCentered
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from salomepl.geometry import getGeom
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from salomepl.mesh import Mesh, Fineness, ExtrusionMethod, defaultParameters
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###
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# Model
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##
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model = Anisotropy()
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model.updateFromDB()
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p = model.getParams(name, direction, theta)
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###
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# Logger
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##
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logging.basicConfig(
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level = logging.INFO,
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format = model.env["logger"]["format"],
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handlers = [
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logging.StreamHandler(),
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logging.FileHandler(
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os.path.join(model.env["LOG"], model.env["logger"]["name"])
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)
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]
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)
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logger = logging.getLogger(model.env["logger"]["name"])
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###
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# Entry
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##
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logger.info("\n".join([
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"genmesh:",
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f"structure type:\t{ p['name'] }",
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f"coefficient:\t{ p['geometry']['theta'] }",
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f"fillet:\t{ p['geometry']['fillets'] }",
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f"flow direction:\t{ p['geometry']['direction'] }"
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]))
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salome.salome_init()
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###
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# Shape
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##
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geompy = getGeom()
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structure = globals().get(config.structure)
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shape, groups = structure(config.geometry.theta, config.geometry.fillet, config.geometry.direction)
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structure = globals().get(p["name"])
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shape, groups = structure(
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p["geometry"]["theta"],
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p["geometry"]["fillets"],
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p["geometry"]["direction"]
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)
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[length, surfaceArea, volume] = geompy.BasicProperties(shape, theTolerance = 1e-06)
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logger.info(f"""shape:
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edges length:\t{ length }
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surface area:\t{ surfaceArea }
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volume:\t{ volume }""")
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logger.info("\n".join([
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"shape:"
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f"edges length:\t{ length }",
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f"surface area:\t{ surfaceArea }",
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f"volume:\t{ volume }"
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]))
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###
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# Mesh
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##
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config = dict(config)
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mp = p["mesh"]
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mconfig = defaultParameters(**config["mesh"])
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lengths = [ geompy.BasicProperties(edge)[0] for edge in geompy.SubShapeAll(shape, geompy.ShapeType["EDGE"]) ]
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lengths = [
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geompy.BasicProperties(edge)[0] for edge in geompy.SubShapeAll(shape, geompy.ShapeType["EDGE"])
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]
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meanSize = sum(lengths) / len(lengths)
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mconfig["maxSize"] = meanSize
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mconfig["minSize"] = meanSize * 1e-1
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mconfig["chordalError"] = mconfig["maxSize"] / 2
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mp["maxSize"] = meanSize
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mp["minSize"] = meanSize * 1e-1
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mp["chordalError"] = mp["maxSize"] / 2
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faces = []
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for group in groups:
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if group.GetName() in mconfig["facesToIgnore"]:
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faces.append(group)
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mconfig["faces"] = faces
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mesh = Mesh(shape)
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mesh.Tetrahedron(**mconfig)
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mesh.Tetrahedron(**mp)
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if mconfig["viscousLayers"]:
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mesh.ViscousLayers(**mconfig)
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if mp["viscousLayers"]:
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mesh.ViscousLayers(**mp, faces = faces)
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config["mesh"].update(mconfig)
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smconfigs = config["mesh"]["submesh"]
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smp = p["submesh"]
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for name in smconfigs.keys():
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for name in smp.keys():
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for group in groups:
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if group.GetName() == name:
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subshape = group
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smconfig = defaultParameters(**smconfigs[name])
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smconfig["maxSize"] = meanSize * 1e-1
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smconfig["minSize"] = meanSize * 1e-3
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smconfig["chordalError"] = smconfig["minSize"] * 1e+1
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smp["maxSize"] = meanSize * 1e-1
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smp["minSize"] = meanSize * 1e-3
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smp["chordalError"] = smp["minSize"] * 1e+1
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mesh.Triangle(subshape, **smconfig)
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config["mesh"]["submesh"][name].update(smconfig)
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mesh.Triangle(subshape, **smp)
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returncode, errors = mesh.compute()
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if not returncode:
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config["status"]["mesh"] = True
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# TODO: MeshResult
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pass
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else:
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logger.error(errors)
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with open(CONFIG, "w") as io:
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toml.dump(config, io)
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mesh.removePyramids()
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mesh.assignGroups()
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mesh.exportUNV(os.path.join(CASE, "mesh.unv"))
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mesh.exportUNV(os.path.join(p["path"], "mesh.unv"))
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stats = ""
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for k, v in mesh.stats().items():
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@ -120,23 +164,3 @@ def genmesh(config):
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salome.salome_close()
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if __name__ == "__main__":
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CONFIG = os.path.join(CASE, "task.toml")
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config = struct(toml.load(CONFIG))
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LOG = os.path.join(ROOT, "logs")
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logging.basicConfig(
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level = logging.INFO,
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format = config.logger.format,
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handlers = [
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logging.StreamHandler(),
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logging.FileHandler(f"{ LOG }/{ config.logger.name }.log")
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]
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)
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logger = logging.getLogger(config.logger.name)
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genmesh(config)
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@ -40,14 +40,14 @@ def runSalome(port: int, scriptpath: str, root: str, logpath: str = None, *args)
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if not logpath:
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logpath = "/tmp/salome.log"
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fullargs = list(args)
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fullargs.extend([ root, logpath ])
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fmtargs = "args:{}".format(", ".join([ str(arg) for arg in args ]))
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cmdargs = [
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"start", "-t",
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"--shutdown-servers=1",
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"--port", str(port),
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scriptpath,
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root,
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logpath,
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fmtargs
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]
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