New: cwd approach
Mod: improved cli Fix: missed boundary condition for main flow
This commit is contained in:
parent
750bf30e11
commit
5119e04a09
@ -78,26 +78,27 @@ faceCentered = true
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fuseEdges = true
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checkChartBoundary = false
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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# multiplication velocity value with flow direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flow]
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scale = [ 1e-5, 1e-5, 1e-5 ]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "pressureInletVelocity", value = 0.0 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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# multiplication velocity value with flow direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[[structures]]
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[structures.structure]
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@ -166,26 +167,27 @@ faceCentered = true
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fuseEdges = true
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checkChartBoundary = false
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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# multiplication velocity value with direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flow]
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scale = [ 1e-5, 1e-5, 1e-5 ]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "pressureInletVelocity", value = 0.0 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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# multiplication velocity value with direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[[structures]]
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[structures.structure]
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@ -254,24 +256,26 @@ faceCentered = true
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fuseEdges = true
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checkChartBoundary = false
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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# multiplication velocity value with direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flow]
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scale = [ 1e-5, 1e-5, 1e-5 ]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "fixedValue", value = 0.0 }
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velocity.boundaryField.inlet = { type = "pressureInletVelocity", value = 0.0 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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[structures.flowapprox]
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transportProperties.nu = 1e-6
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pressure.boundaryField.inlet = { type = "fixedValue", value = 1e-3 }
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pressure.boundaryField.outlet = { type = "fixedValue", value = 0 }
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# multiplication velocity value with direction vector
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velocity.boundaryField.inlet = { type = "fixedValue", value = 6e-5 }
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velocity.boundaryField.outlet = { type = "zeroGradient", value = "None" }
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@ -4,7 +4,8 @@
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import click
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import ast
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import os
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import os, shutil
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import logging
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class LiteralOption(click.Option):
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def type_cast_value(self, ctx, value):
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@ -63,6 +64,29 @@ def version():
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def anisotropy():
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pass
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@anisotropy.command(
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help = "Initialize project in cwd"
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)
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def init():
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from anisotropy import env
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from anisotropy.core.utils import setupLogger
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from anisotropy.core.main import logger, Database
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setupLogger(logger, logging.INFO)
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cwd = os.getcwd()
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wds = [ "build", "logs" ]
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for wd in wds:
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os.makedirs(os.path.join(cwd, wd), exist_ok = True)
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shutil.copy(env["CONFIG"], os.path.join(cwd, "anisotropy.toml"), follow_symlinks = True)
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db = Database(env["db_name"], cwd)
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db.setup()
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logger.info(f"Initialized anisotropy project in { cwd }")
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@anisotropy.command(
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help = """Computes cases by chain (mesh -> flow)
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@ -81,19 +105,15 @@ def anisotropy():
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default = 1,
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help = "Count of parallel processes"
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)
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@click.option(
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"-D", "--database", "database",
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help = "Database path"
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)
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@click.option(
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"-f", "--force", "force",
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type = click.BOOL,
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is_flag = True,
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default = False,
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help = "Overwrite existing entries"
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)
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@click.option(
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"-u", "--update", "update",
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type = click.BOOL,
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is_flag = True,
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default = False,
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help = "Update db parameters from config"
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)
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@ -104,10 +124,24 @@ def anisotropy():
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cls = KeyValueOption,
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help = "Overwrite existing parameter (except control variables)"
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)
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def compute(stage, nprocs, database, force, update, params):
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@click.option(
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"-P", "--path", "path",
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default = os.getcwd(),
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help = "Specify directory to use (instead of cwd)"
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)
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def compute(stage, nprocs, force, update, params, path):
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from anisotropy import env
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from anisotropy.core.main import Anisotropy, Database, logger
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from anisotropy.core.utils import timer, parallel
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from anisotropy.core.utils import setupLogger, timer, parallel
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env.update(
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LOG = os.path.join(path, "logs"),
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BUILD = os.path.join(path, "build"),
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CONFIG = os.path.join(path, "anisotropy.toml"),
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db_path = path
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)
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setupLogger(logger, logging.INFO, env["LOG"])
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args = dict()
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for param in params:
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@ -115,30 +149,31 @@ def compute(stage, nprocs, database, force, update, params):
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###
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model = Anisotropy()
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model.db = Database(env["db_name"], env["db_path"])
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if database:
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if database[-3: ] == ".db":
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splitted = database.split("/")
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db_path = "/".join(splitted[ :-1])
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db_name = splitted[-1: ][0][ :-3]
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else:
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raise Exception("Invalid database extension")
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model.db = Database(db_name, db_path)
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logger.info("Constructing database, tables ...")
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logger.info("Configuring database ...")
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model.db.setup()
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def fill_db():
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if model.db.isempty() or update:
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paramsAll = model.loadFromScratch()
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paramsAll = model.loadFromScratch(env["CONFIG"])
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if args.get("type"):
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paramsAll = [ entry for entry in paramsAll if args["type"] == entry["structure"]["type"] ]
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if args.get("direction"):
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paramsAll = [ entry for entry in paramsAll if args["direction"] == entry["structure"]["direction"] ]
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if args.get("theta"):
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paramsAll = [ entry for entry in paramsAll if args["theta"] == entry["structure"]["theta"] ]
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for entry in paramsAll:
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model.db.update(entry)
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_, fill_elapsed = timer(fill_db)()
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logger.info(f"Elapsed time = { fill_elapsed }")
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logger.info("{} entries was updated.".format(len(paramsAll)))
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else:
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logger.info("Database was not modified.")
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###
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def computeCase(stage, type, direction, theta):
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@ -152,7 +187,7 @@ def compute(stage, nprocs, database, force, update, params):
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if stage == "all" or stage == "mesh":
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if not case.params.get("meshresult", {}).get("status") == "Done" or force:
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(out, err, returncode), elapsed = timer(case.computeMesh)()
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(out, err, returncode), elapsed = timer(case.computeMesh)(path)
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if out: logger.info(out)
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if err: logger.error(err)
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@ -172,7 +207,7 @@ def compute(stage, nprocs, database, force, update, params):
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if stage == "all" or stage == "flow":
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if not case.params.get("flowresult", {}).get("status") == "Done" or force:
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(out, err, returncode), elapsed = timer(case.computeFlow)()
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(out, err, returncode), elapsed = timer(case.computeFlow)(path)
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if out: logger.info(out)
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if err: logger.error(err)
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@ -219,7 +254,8 @@ def compute(stage, nprocs, database, force, update, params):
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@click.argument("type")
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@click.argument("direction")
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@click.argument("theta")
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def computemesh(root, type, direction, theta):
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@click.argument("path")
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def computemesh(root, type, direction, theta, path):
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# ISSUE: can't hide command from help, 'hidden = True' doesn't work
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# [Salome Environment]
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@ -239,17 +275,27 @@ def computemesh(root, type, direction, theta):
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os.path.join(root, "env/lib/python3.9/site-packages")
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])
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from anisotropy.core.main import Anisotropy
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from anisotropy import env
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from anisotropy.core.main import Anisotropy, Database
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import salome
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###
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model = Anisotropy()
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model.db = Database(env["db_name"], path)
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model.load(type, direction, theta)
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salome.salome_init()
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model.genmesh()
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model.genmesh(path)
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salome.salome_close()
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@anisotropy.command(
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help = "Post processing"
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)
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def postprocessing():
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pass
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###
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# CLI entry
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##
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@ -25,7 +25,7 @@ import anisotropy.salomepl.mesh
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from anisotropy.samples import Simple, FaceCentered, BodyCentered
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logger = logging.getLogger(env["logger_name"])
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setupLogger(logger, logging.INFO, env["LOG"])
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#setupLogger(logger, logging.INFO, env["LOG"])
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#peeweeLogger = logging.getLogger("peewee")
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#peeweeLogger.setLevel(logging.INFO)
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@ -83,18 +83,22 @@ class Anisotropy(object):
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return "\n".join([ f"{ k }: { v }" for k, v in versions.items() ])
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def loadFromScratch(self) -> list:
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def loadFromScratch(self, configpath: str = None) -> list:
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"""Loads parameters from configuration file and expands special values
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:return: List of dicts with parameters
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:rtype: list
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"""
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config = configpath or self.env["CONFIG"]
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if not os.path.exists(self.env["CONFIG"]):
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logger.error("Missed default configuration file")
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if not os.path.exists(config):
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logger.error("Missed configuration file")
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return
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buf = toml.load(self.env["CONFIG"]).get("structures")
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else:
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logger.info(f"Configuration file: { config }")
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buf = toml.load(config).get("structures")
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paramsAll = []
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# TODO: custom config and merge
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@ -204,7 +208,7 @@ class Anisotropy(object):
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fillets = fillets
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)
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def getCasePath(self) -> str:
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def getCasePath(self, path: str = None) -> str:
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"""Constructs case path from control parameters
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:return: Absolute path to case
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@ -216,15 +220,21 @@ class Anisotropy(object):
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logger.error("Trying to use empty parameters")
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return
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if path:
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path = os.path.join(path, "build")
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else:
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path = self.env["BUILD"]
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return os.path.join(
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self.env["BUILD"],
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path,
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structure["type"],
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"direction-{}".format(str(structure['direction']).replace(" ", "")),
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f"theta-{ structure['theta'] }"
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)
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def computeMesh(self):
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def computeMesh(self, path):
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"""Computes a mesh on shape via Salome
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:return: Process output, error messages and returncode
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@ -237,6 +247,7 @@ class Anisotropy(object):
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p["type"],
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p["direction"],
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p["theta"],
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path
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]
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manager = salomepl.utils.SalomeManager()
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@ -249,12 +260,13 @@ class Anisotropy(object):
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)
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def genmesh(self):
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def genmesh(self, path):
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"""Computes a mesh on shape
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Warning: Working only inside Salome Environment
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"""
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setupLogger(logger, logging.INFO, self.env["LOG"])
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p = self.params
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###
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@ -327,10 +339,13 @@ class Anisotropy(object):
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mesh.removePyramids()
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mesh.assignGroups()
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casePath = self.getCasePath()
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casePath = self.getCasePath(path)
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os.makedirs(casePath, exist_ok = True)
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logger.info("Exporting mesh ...")
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mesh.exportUNV(os.path.join(casePath, "mesh.unv"))
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returncode, err = mesh.exportUNV(os.path.join(casePath, "mesh.unv"))
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if returncode:
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logger.error(err)
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meshStats = mesh.stats()
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p["meshresult"].update(
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@ -352,7 +367,7 @@ class Anisotropy(object):
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self.update()
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def computeFlow(self):
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def computeFlow(self, path):
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"""Computes a flow on mesh via OpenFOAM
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:return: Process output, error messages and returncode
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@ -387,13 +402,13 @@ class Anisotropy(object):
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##
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if not os.path.exists("mesh.unv"):
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logger.error(f"missed 'mesh.unv'")
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os.chdir(self.env["ROOT"])
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os.chdir(path or self.env["ROOT"])
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return "", "", 1
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out, err, returncode = openfoam.ideasUnvToFoam("mesh.unv")
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if returncode:
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os.chdir(self.env["ROOT"])
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os.chdir(path or self.env["ROOT"])
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return out, err, returncode
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openfoam.createPatch(dictfile = "system/createPatchDict")
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