Mod: computation parameters

Mod: move salome context to cli

anisotropy/config/default.toml

@@ -35,8 +35,8 @@ faceCentered = true
     minSize = 0.05
 
     fineness = 5
-    growthRate = 0.7
-    nbSegPerEdge = 0.3
+    growthRate = 0.5
+    nbSegPerEdge = 2
     nbSegPerRadius = 1
     
     chordalErrorEnabled = true
@@ -123,8 +123,8 @@ faceCentered = true
     minSize = 0.05
 
     fineness = 5
-    growthRate = 0.7
-    nbSegPerEdge = 0.3
+    growthRate = 0.5
+    nbSegPerEdge = 2
     nbSegPerRadius = 1
     
     chordalErrorEnabled = true
@@ -191,7 +191,7 @@ faceCentered = true
     [structures.structure]
     type = "faceCentered"
     # auto # from theta: list # theta: float
-    theta = [0.01, 0.18, 0.01]  # [min, max, step]
+    theta = [0.01, 0.12, 0.01]  # [min, max, step]
     # auto # from directions:list # direction: list
     directions = [  
         [1, 0, 0],
@@ -211,8 +211,8 @@ faceCentered = true
     minSize = 0.05
 
     fineness = 5
-    growthRate = 0.7
-    nbSegPerEdge = 0.3
+    growthRate = 0.5
+    nbSegPerEdge = 2
     nbSegPerRadius = 1
     
     chordalErrorEnabled = true

anisotropy/core/cli.py

@@ -91,6 +91,12 @@ def anisotropy():
     default = False,
     help = "Overwrite existing entries"
 )
+@click.option(
+    "-u", "--update", "update",
+    type = click.BOOL,
+    default = False,
+    help = "Update db parameters from config"
+)
 @click.option(
     "-p", "--param", "params", 
     metavar = "key=value", 
@@ -98,7 +104,7 @@ def anisotropy():
     cls = KeyValueOption,
     help = "Overwrite existing parameter (except control variables)"
 )
-def compute(stage, nprocs, database, force, params):
+def compute(stage, nprocs, database, force, update, params):
     from anisotropy.core.main import Anisotropy, Database, logger
     from anisotropy.core.utils import timer, parallel
 
@@ -125,7 +131,7 @@ def compute(stage, nprocs, database, force, params):
     model.db.setup()
 
     def fill_db():
-        if model.db.isempty():
+        if model.db.isempty() or update:
             paramsAll = model.loadFromScratch()
 
             for entry in paramsAll:
@@ -234,12 +240,15 @@ def computemesh(root, type, direction, theta):
     ])
 
     from anisotropy.core.main import Anisotropy
+    import salome 
 
     ###
     model = Anisotropy()
     model.load(type, direction, theta)
 
+    salome.salome_init()
     model.genmesh()
+    salome.salome_close()
 
 ###
 #   CLI entry

anisotropy/core/main.py

@@ -254,15 +254,9 @@ class Anisotropy(object):
 
         Warning: Working only inside Salome Environment
         """
-        # ISSUE: double logger output
-
-        import salome 
 
         p = self.params
 
-        salome.salome_init()
-
-
         ###
         #   Shape
         ##
@@ -357,8 +351,6 @@ class Anisotropy(object):
             )
             self.update()
 
-        salome.salome_close()
-
 
     def computeFlow(self):
         """Computes a flow on mesh via OpenFOAM

anisotropy/samples/bodyCentered.py

@@ -179,7 +179,7 @@ class BodyCentered(object):
         #   Groups
         ##
         shape = geompy.MakeCutList(poreCell, [grains])
-        shape = geompy.MakeScaleTransform(shape, oo, 1 / scale, theName = "bodyCenteredCubic")
+        shape = geompy.MakeScaleTransform(shape, oo, 1 / scale, theName = "bodyCentered")
 
         sall = geompy.CreateGroup(shape, geompy.ShapeType["FACE"])
         geompy.UnionIDs(sall,