New: cli command 'show'
This commit is contained in:
parent
b19c310a98
commit
de9d3331d0
@ -46,6 +46,26 @@ class KeyValueOption(click.Option):
|
||||
else:
|
||||
return self._convert(ctx, value)
|
||||
|
||||
class CliListOption(click.Option):
|
||||
def _convert(self, ctx, value):
|
||||
if not value:
|
||||
return []
|
||||
|
||||
output = [ val for val in value.split(",") ]
|
||||
|
||||
if "" in output:
|
||||
raise click.BadParameter(f"{ value } (Trying to pass empty item)")
|
||||
|
||||
return output
|
||||
|
||||
|
||||
def type_cast_value(self, ctx, value):
|
||||
if isinstance(value, list):
|
||||
return [ self._convert(ctx, val) for val in value ]
|
||||
|
||||
else:
|
||||
return self._convert(ctx, value)
|
||||
|
||||
|
||||
def version():
|
||||
msg = "Missed package anisotropy"
|
||||
@ -105,7 +125,7 @@ def init(path):
|
||||
help = "Overwrite existing entries"
|
||||
)
|
||||
@click.option(
|
||||
"-p", "--param", "params",
|
||||
"-p", "--params", "params",
|
||||
metavar = "key=value",
|
||||
multiple = True,
|
||||
cls = KeyValueOption,
|
||||
@ -185,7 +205,7 @@ def update(force, params, path):
|
||||
help = "Overwrite existing entries"
|
||||
)
|
||||
@click.option(
|
||||
"-p", "--param", "params",
|
||||
"-p", "--params", "params",
|
||||
metavar = "key=value",
|
||||
multiple = True,
|
||||
cls = KeyValueOption,
|
||||
@ -349,9 +369,11 @@ def computemesh(root, type, direction, theta, path):
|
||||
##
|
||||
import os, sys
|
||||
|
||||
pyversion = "{}.{}".format(*sys.version_info[:2])
|
||||
sys.path.extend([
|
||||
root,
|
||||
os.path.join(root, "env/lib/python3.9/site-packages")
|
||||
os.path.join(root, "env/lib/python{}/site-packages".format(pyversion)),
|
||||
os.path.abspath(".local/lib/python{}/site-packages".format(pyversion))
|
||||
])
|
||||
|
||||
from anisotropy import env
|
||||
@ -368,86 +390,18 @@ def computemesh(root, type, direction, theta, path):
|
||||
salome.salome_close()
|
||||
|
||||
|
||||
@anisotropy.command(
|
||||
help = "Post processing"
|
||||
)
|
||||
@click.option(
|
||||
"-P", "--path", "path",
|
||||
default = os.getcwd(),
|
||||
help = "Specify directory to use (instead of cwd)"
|
||||
)
|
||||
@click.argument(
|
||||
"plot",
|
||||
type = click.Choice(["permeability"])
|
||||
)
|
||||
def postprocessing(path, plot):
|
||||
from anisotropy import env
|
||||
from anisotropy.core.main import Database
|
||||
from pandas import Series
|
||||
import matplotlib.pyplot as plt
|
||||
|
||||
env.update(
|
||||
LOG = os.path.join(path, "logs"),
|
||||
BUILD = os.path.join(path, "build"),
|
||||
CONFIG = os.path.join(path, "anisotropy.toml"),
|
||||
db_path = path
|
||||
)
|
||||
|
||||
###
|
||||
db = Database(env["db_name"], env["db_path"])
|
||||
db.setup()
|
||||
|
||||
params = db.loadGeneral()
|
||||
paramsAll = []
|
||||
|
||||
for p in params:
|
||||
s = p["structure"]
|
||||
paramsAll.append(db.load(s["type"], s["direction"], s["theta"]))
|
||||
|
||||
paramsAll.sort(key = lambda src: f"{ src['structure']['type'] }{ src['structure']['direction'] }{ src['structure']['theta'] }")
|
||||
|
||||
def getTD(src, type, direction):
|
||||
return src["structure"]["type"] == type and src["structure"]["direction"] == direction
|
||||
|
||||
if plot == "permeability":
|
||||
for structure in ["simple", "faceCentered", "bodyCentered"]:
|
||||
d1 = [ entry for entry in paramsAll if getTD(entry, structure, [1.0, 0.0, 0.0]) ]
|
||||
d2 = [ entry for entry in paramsAll if getTD(entry, structure, [0.0, 0.0, 1.0]) ]
|
||||
d3 = [ entry for entry in paramsAll if getTD(entry, structure, [1.0, 1.0, 1.0]) ]
|
||||
|
||||
theta = [ entry["structure"]["theta"] for entry in d1 ]
|
||||
fr1 = Series([ entry.get("flowresult", {}).get("flowRate", None) for entry in d1 ], theta)
|
||||
fr2 = Series([ entry.get("flowresult", {}).get("flowRate", None) for entry in d2 ], theta)
|
||||
fr3 = Series([ entry.get("flowresult", {}).get("flowRate", None) for entry in d3 ], theta)
|
||||
|
||||
pm2 = 2 * fr2 / fr1
|
||||
pm3 = 2 * fr3 / fr1
|
||||
|
||||
plt.figure(1)
|
||||
|
||||
ax1 = pm2.plot(style = "o")
|
||||
ax1.set_label("k_2 / k_1")
|
||||
ax2 = pm3.plot(style = "o")
|
||||
ax2.set_label("k_3 / k_1")
|
||||
|
||||
plt.title(structure)
|
||||
plt.xlabel("theta")
|
||||
plt.ylabel("permeability")
|
||||
plt.legend()
|
||||
plt.grid()
|
||||
plt.show()
|
||||
|
||||
|
||||
@anisotropy.command()
|
||||
@click.option(
|
||||
"-p", "--param", "params",
|
||||
"-p", "--params", "params",
|
||||
metavar = "key=value",
|
||||
multiple = True,
|
||||
cls = KeyValueOption,
|
||||
help = "Select by control parameter (type, direction, theta)"
|
||||
help = "Select by control parameters (type, direction, theta)"
|
||||
)
|
||||
@click.option(
|
||||
"-P", "--path", "path",
|
||||
metavar = "PATH",
|
||||
default = os.getcwd(),
|
||||
help = "Specify directory to use (instead of cwd)"
|
||||
)
|
||||
@ -459,16 +413,26 @@ def postprocessing(path, plot):
|
||||
@click.option(
|
||||
"--export",
|
||||
metavar = "PATH",
|
||||
help = "Export query result to CSV."
|
||||
help = "Export output."
|
||||
)
|
||||
@click.option(
|
||||
"--fields", "fields",
|
||||
metavar = "f1,f2,...",
|
||||
multiple = True,
|
||||
cls = CliListOption,
|
||||
help = "Select fields to use."
|
||||
)
|
||||
@click.argument(
|
||||
"fields",
|
||||
required = False
|
||||
"output",
|
||||
required = False,
|
||||
type = click.Choice(["cli", "plot"]),
|
||||
default = "cli"
|
||||
)
|
||||
def query(params, path, printlist, export, fields):
|
||||
def show(params, path, printlist, export, fields, output):
|
||||
from anisotropy import env
|
||||
from anisotropy.core.database import Database, Structure
|
||||
from pandas import DataFrame
|
||||
from pandas import DataFrame, Series
|
||||
import matplotlib.pyplot as plt
|
||||
|
||||
env.update(
|
||||
LOG = os.path.join(path, "logs"),
|
||||
@ -482,7 +446,6 @@ def query(params, path, printlist, export, fields):
|
||||
for param in params:
|
||||
args.update(param)
|
||||
|
||||
fields = [ field.strip() for field in fields.split(",") ] if fields else []
|
||||
|
||||
###
|
||||
db = Database(env["db_name"], env["db_path"])
|
||||
@ -516,21 +479,58 @@ def query(params, path, printlist, export, fields):
|
||||
|
||||
return
|
||||
|
||||
|
||||
tables = []
|
||||
|
||||
if fields:
|
||||
for field in fields:
|
||||
if field not in df_keys:
|
||||
click.echo(f"Unknown field '{ field }'. Try to use '--list' flag to see all avaliable fields.")
|
||||
for fieldslist in fields:
|
||||
for field in fieldslist:
|
||||
if field not in df_keys:
|
||||
click.echo(f"Unknown field '{ field }'. Try to use '--list' flag to see all avaliable fields.")
|
||||
|
||||
return
|
||||
return
|
||||
|
||||
df = df[fields]
|
||||
tables.append(df[fieldslist])
|
||||
else:
|
||||
tables.append(df)
|
||||
|
||||
fig, ax = plt.subplots(nrows = 1, ncols = 1)
|
||||
|
||||
for table in tables:
|
||||
table.plot(table.keys()[0], table.keys()[1], ax = ax, style = "o")
|
||||
|
||||
plt.legend()
|
||||
plt.grid()
|
||||
#plt.show()
|
||||
|
||||
if export:
|
||||
df.to_csv(export, sep = ";")
|
||||
supported = ["csv", "jpg"]
|
||||
filepath, ext = os.path.splitext(export)
|
||||
ext = ext.replace(".", "")
|
||||
|
||||
if ext not in supported:
|
||||
click.echo(f"Unknown extension '{ ext }'.")
|
||||
|
||||
return
|
||||
|
||||
if ext == "csv":
|
||||
if len(tables) == 1:
|
||||
tables[0].to_csv(export, sep = ";")
|
||||
|
||||
else:
|
||||
for n, table in enumerate(tables):
|
||||
table.to_csv("{}.{}.{}".format(filepath, n, ext), sep = ";")
|
||||
|
||||
elif ext == "jpg":
|
||||
plt.savefig(export)
|
||||
|
||||
else:
|
||||
click.echo(df.to_string())
|
||||
|
||||
if output == "cli":
|
||||
res = "\n\n".join([ table.to_string() for table in tables ])
|
||||
click.echo(res)
|
||||
|
||||
elif output == "plot":
|
||||
plt.show()
|
||||
|
||||
|
||||
###
|
||||
|
||||
Loading…
Reference in New Issue
Block a user