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381 Commits

Author SHA1 Message Date
Matthias Hochsteger
94ecf8de92 Fix private linking of Python 
The CMake export of Interface libraries also exports PRIVATE build
settings, which leads to build errors with non-existing include paths and .lib files for binary distributions.

Use the work-around mentioned here to circumvent this behavior:
https://gitlab.kitware.com/cmake/cmake/-/issues/15415#note_849405
 2020-12-18 11:05:10 +01:00
Joachim Schöberl
d30accdc1a Merge branch 'apple_silicon' into 'master' 
Support for Apple M1

See merge request jschoeberl/netgen!359
 2020-12-16 20:47:21 +00:00
Matthias Hochsteger
eb6ac164e7 int64_t for masks 2020-12-16 21:00:12 +01:00
Matthias Hochsteger
d97a9a6594 Alignment for generic SIMD classes 2020-12-16 17:20:18 +01:00
Matthias Hochsteger
e68d8cea9b workaround for missing intrinsic on GCC 7 2020-12-16 10:58:01 +01:00
Matthias Hochsteger
9c0dbec8c9 Fix SIMD<mask64> ctor and Unpack 2020-12-15 15:31:17 +01:00
Matthias Hochsteger
dbe894fea3 Support for Apple M1 2020-12-15 10:43:11 +01:00
Matthias Hochsteger
1b55c51da5 remove AlignedAlloc, use alignas 2020-12-15 09:40:43 +01:00
Matthias Hochsteger
1f3aebcec0 Fix AVX-Operators for int64_t simd (use generic ones) 2020-12-15 09:40:43 +01:00
mhochsteger
f213a7a5b1 fix fabs for AVX on Windows 2020-12-14 15:50:27 +01:00
Matthias Hochsteger
248145bbf0 fix wrong simd operators 2020-12-14 12:47:53 +01:00
Matthias Hochsteger
fc44eb95df simd - array and variadic ctor 2020-12-11 23:12:34 +01:00
Matthias Hochsteger
2d667a08dc move (refactored) SIMD headers from ngsolve into ngcore 2020-12-11 20:54:41 +01:00
Christopher Lackner
cb0d8295bf fix hashing of bitarray (uninitialized value in HashArchive & random 
values at end)
 2020-11-25 22:07:07 +01:00
Matthias Hochsteger
91f127ef71 memory tracer - fix memory accumulation of children 2020-11-25 14:34:29 +01:00
Matthias Hochsteger
b55264e0ee memory tracing - handle multiple consecutive tracers correctly 2020-11-24 19:20:21 +01:00
Matthias Hochsteger
efdc57885a memory tracing - store parents array instead of children table 2020-11-24 17:12:39 +01:00
Christopher Lackner
922ad16213 if more memory is deallocated than allocated set memtracer to 0 not 
negative values
 2020-11-21 22:32:41 +01:00
Christopher Lackner
a69cdc9000 mem tracing compile time option, simplify by MemoryTracer as member 2020-11-21 15:49:07 +01:00
Matthias Hochsteger
87623981a6 export PajeTrace.WriteMemoryChart() to python 2020-11-19 19:29:04 +01:00
Matthias Hochsteger
f0152baacf mem tracing - TraceMemorySwap helper function 2020-11-19 17:35:29 +01:00
Matthias Hochsteger
6f98123e98 mem tracing - use topological sorting, some fixes 2020-11-19 16:16:39 +01:00
Matthias Hochsteger
a17066a387 html chart for peak memory consumption, some Array tracing fixes 2020-11-19 14:57:45 +01:00
Matthias Hochsteger
f143995f27 clean up memory tracing 2020-11-18 21:45:00 +01:00
Matthias Hochsteger
1a93fb3fa5 first attempt on memory tracing 2020-11-18 20:20:35 +01:00
Joachim Schöberl
cddfb4a0b5 fixing delaunay2d point search, non-parallel for small meshes 2020-10-26 11:20:12 +01:00
Joachim Schöberl
bfbef51996 remove bitarray in delaunay2d, just one hashtable position 2020-10-23 19:40:47 +02:00
Matthias Hochsteger
832485e41a pybind11 compatibility 2020-10-22 12:11:19 +02:00
Matthias Hochsteger
b3d757ccd1 update pybind11 to 2.6.0rc3 2020-10-17 17:58:38 +02:00
Matthias Hochsteger
6544fbeca6 sunburst chart - tooltip formatting 2020-10-14 11:52:34 +02:00
Matthias Hochsteger
14e6a1d24b more statistics in sunburst chart 2020-10-14 11:52:26 +02:00
Matthias Hochsteger
25efdadd05 helper macro for Timer/RegionTimer definition 2020-10-13 11:11:33 +02:00
Joachim Schöberl
b5a9580a8e BitArray::Data 2020-10-08 21:27:16 +02:00
Matthias Hochsteger
2629208f38 pajetrace - fix Timer names in MPI-trace 2020-10-08 12:20:46 +02:00
Matthias Hochsteger
7a1344bfcb cmake variable NG_COMPILE_FLAGS to set additional compile options 2020-10-01 13:35:53 +02:00
Christopher Lackner
1666155d25 add range adaptors (filter, transform) 2020-09-19 17:39:03 +02:00
Joachim Schöberl
283db5c637 trange bracket with size_t for T_Range 2020-09-19 09:43:00 +02:00
Joachim Schöberl
8b5675a8e2 check if mpi is initialized 2020-09-15 23:16:04 +02:00
Christopher Lackner
c7af26771e fix bug in BitArray== 2020-09-11 16:54:25 +02:00
Joachim Schöberl
65761e7768 check copy_assignable also in copy-constructor 2020-09-09 07:03:12 +02:00
Joachim Schöberl
98697959dd check for copy_assignable 2020-09-09 06:31:03 +02:00
Joachim Schöberl
b2b8a15611 Array copy only if type is assignable 2020-09-08 23:00:03 +02:00
Joachim Schöberl
a45cbd6f84 parallel pickling per default on 2020-09-04 14:47:56 +02:00
Christopher Lackner
a8062a6f36 fix missing initial value for offset in HashArchive 2020-09-01 11:59:37 +02:00
Christopher Lackner
deab89adf8 add missing NGCORE_API and HashArchive & with const value 2020-08-29 16:19:45 +02:00
Christopher Lackner
55971b3dde HashArchive 2020-08-29 15:38:03 +02:00
Christopher Lackner
f45fbfd811 operator== and better archive for BitArray 2020-08-29 15:37:48 +02:00
Joachim Schöberl
020dd4373d DynamicTable: char-alloc if not trivially constructable 2020-08-29 12:36:45 +02:00
Joachim Schöberl
8840c519d3 Min/Max of FlatArray, DynamicTable::ChangeSize 2020-08-29 11:04:47 +02:00
Joachim Schöberl
73846f23ae remove BaseDynamicTable, everything in template class 2020-08-29 09:58:33 +02:00
Joachim Schöberl
f8dd4be8d6 modernize ParallelTopology 2020-08-29 09:36:46 +02:00
Joachim Schöberl
9968037361 move semantics to table, PNums to LineSegments 2020-08-28 08:47:33 +02:00
Joachim Schöberl
5863136285 MaybeTrue/False for xbool 2020-08-23 18:47:49 +02:00
Matthias Hochsteger
334faad054 pybind11 - automatic conversion of python list to Array<> 2020-08-20 18:25:06 +02:00
Joachim Schöberl
5e09626466 parallel pickling with mesh-merging 2020-08-19 14:50:11 +02:00
Joachim Schöberl
9e105c48ea mpi-wrapper 2020-08-17 20:28:00 +02:00
Joachim Schöberl
33626c6669 clear solutiondata object on python-exit 2020-08-17 15:55:32 +02:00
Matthias Hochsteger
72447a51d5 Fix paje trace with MPI and TaskManager 2020-08-10 12:20:17 +02:00
Matthias Hochsteger
87c2901e32 Disable paje trace thread counter by default (halves trace file size) 2020-08-07 15:44:21 +02:00
Matthias Hochsteger
b272614a51 export PajeTrace to Python (with context manager api) 2020-08-07 15:43:52 +02:00
Matthias Hochsteger
f9ff1db7c3 let MPI rank 1 write paje trace file (more timers than rank0) 2020-08-07 15:34:21 +02:00
Matthias Hochsteger
acfe9bb606 Merge traces with MPI 2020-08-07 12:59:22 +02:00
Joachim Schöberl
2e39d07cc8 mpi constants for non-mpi 2020-08-05 18:05:31 +02:00
Joachim Schöberl
3c8f1877c9 more mpi calls from ngcore 2020-08-05 01:11:26 +02:00
Joachim Schöberl
254257d406 timer in MPI wrappes 2020-08-04 16:30:08 +02:00
Matthias Hochsteger
4682e6915c remove FlatArray for C-Array, use ArrayMem 2020-08-04 12:59:03 +02:00
Joachim Schöberl
698192ed72 FlatArray for C-array 2020-08-03 14:45:32 +02:00
Joachim Schöberl
94bed40761 modernize parallelmesh (Array, mpi_wrapper) 2020-08-03 00:44:28 +02:00
Joachim Schöberl
c0909d69c2 no valid MPI-comm in sequential mode 2020-08-02 11:33:11 +02:00
Joachim Schöberl
ba84439227 NgMPI_Communicator by reference, check for valid mpi-comm 2020-08-02 09:25:44 +02:00
Joachim Schöberl
c074e0c752 reduce duplicated mpi-wrapping 2020-07-31 09:57:19 +02:00
Matthias Hochsteger
f73159e35a Set version of Netgen globally (for archives), interface to get version 2020-07-23 20:12:47 +02:00
Matthias Hochsteger
dcc0484be0 install netgen_version.hpp, set version in Archive 2020-07-23 16:25:06 +02:00
Joachim Schöberl
ba5e741ad3 adding pybind11/stl to ngcore (needed for BitArray ctor) 2020-07-22 10:15:48 +02:00
Matthias Hochsteger
e17aa88cad set signal handlers only if NG_BACKTRACE is set 2020-07-15 16:21:51 +02:00
Joachim Schöberl
3b5c346e63 proper terms 2020-06-17 19:11:17 +02:00
Joachim Schöberl
897cf6f848 output of xbool 2020-05-22 08:16:05 +02:00
Matthias Hochsteger
267e8b33fb cmake - use git to generate version string 2020-05-18 15:55:40 +02:00
Christopher Lackner
9ffb22c37f fix archive of bitarray 2020-05-07 10:52:09 +02:00
Christopher Lackner
45a4b2c913 pickle bitarrays 2020-05-07 10:03:00 +02:00
Christopher Lackner
9af476c353 template shouldn't have NGCORE_API 2020-04-20 10:26:17 +02:00
Christopher Lackner
27baa178d2 fix new clang warning and add helper function 2020-04-20 10:13:04 +02:00
Christopher Lackner
b46ec8dc7b fix printing of 1 based arrays 2020-04-18 13:40:19 +02:00
Christopher Lackner
d74061dd23 python str method for arrays 2020-04-06 12:43:42 +02:00
Matthias Hochsteger
a52ccd7ce5 Fix build with USE_NUMA=ON 2020-03-25 10:40:12 +01:00
Joachim Schöberl
48e4865fee copy BitArray 2020-03-11 21:34:27 +01:00
Matthias Hochsteger
ce90bd9e83 [cmake] Simplify compile flag handling on Windows 
Add options/define flags to ngcore, so they are automatically passed on
to dependencies
 2020-01-16 16:38:06 -08:00
Matthias Hochsteger
72226e8673 Fix non-Python builds 2019-12-13 11:20:52 +01:00
Joachim Schöberl
a103896079 printing flags 2019-12-09 16:20:42 +01:00
Matthias Hochsteger
7f4b96fe11 Fix ctor with LocalHeap in ClosedHashTable 
Set mask, round up size to next power of 2
 2019-12-02 17:05:50 +01:00
Joachim Schöberl
4658e34f05 Revert "api" 
This reverts commit 3207ab1d99
 2019-11-29 15:26:20 +00:00
Joachim Schöberl
3207ab1d99 api 2019-11-29 15:02:37 +01:00
Matthias Hochsteger
9495d1feae Ignore warning C4910 on Windows 
warning C4910: '__declspec(dllexport)' and 'extern' are incompatible on an explicit instantiation
 2019-11-28 15:49:57 +01:00
Matthias Hochsteger
f3d9d3ad67 [cmake] Don't link python libraries in unix-conda environment 
Conda links python libs statically to python executable
 2019-11-26 19:26:18 +00:00
Christopher Lackner
de1932227b exception constructor outside of ifdef GNUC 2019-11-25 16:45:12 +01:00
Joachim Schöberl
648794b0bb Exception ctor in cpp to reduce codesize 2019-11-25 07:46:35 +01:00
Christopher Lackner
e84e4f155c fix parsing numlist flag if objects are integers 2019-11-21 17:46:39 +01:00
Matthias Hochsteger
8940bf7c2c Only collect backtrace if NG_BACKTRACE is set 2019-11-20 14:30:23 +01:00
Matthias Hochsteger
90fc783e55 Fix visibility warning 2019-11-13 16:07:36 +01:00
Matthias Hochsteger
262c656bcb Fix overflow in backtrace 2019-10-31 18:40:46 +01:00
Matthias Hochsteger
94d0a5a585 [cmake] Set interface include dir for ngcore 2019-10-30 13:56:49 +01:00
Matthias Hochsteger
2a68748117 Add missing delete operators on MacOS 2019-10-28 13:57:21 +01:00
Joachim Schöberl
d0864b9901 Apple-clang seems to support now the standard thread_local variables 2019-10-28 12:18:23 +01:00
Bernd Schwarzenbacher
6d34f01d95 Add a HashValue<INT<3>> for ParallelHashTable 2019-10-21 00:12:29 +02:00
Matthias Hochsteger
c2e658274a Avoid recursive call of signal handler 2019-10-14 18:01:11 +02:00
Matthias Hochsteger
c9e764a32f Catch exceptions in Demangle() 2019-10-14 10:56:27 +02:00
Matthias Hochsteger
9f0edf1741 Use new timers 2019-10-10 15:34:41 +02:00
Christopher Lackner
b3fb12e962 reduce message and log level in python 2019-10-08 16:51:32 +02:00
Matthias Hochsteger
7e3b292bb8 Print inlined functions in stack trace 2019-10-02 15:38:17 +02:00
Matthias Hochsteger
9f7b56fd1f Register signal handlers to print stack trace 2019-10-01 16:30:41 +02:00
Matthias Hochsteger
b7c8f76765 Print stack trace on RangeException 2019-10-01 15:30:33 +02:00
Matthias Hochsteger
e99db57b03 Use rdtsc in Timers 2019-10-01 13:18:24 +02:00
Joachim Schöberl
eeb63f659f Table with IndexType 2019-09-29 17:44:08 +02:00
Matthias Hochsteger
6a7030b81a Activate multithreading when meshing from GUI 
- Meshing options for parallelization and number of threads
 - RegionTaskManager() to locally start the TaskManager
 2019-09-27 11:54:33 +02:00
Christopher Lackner
c359832767 fix pyname for non default constructible classes 2019-09-11 15:17:09 +02:00
Christopher Lackner
485d9f230b platform independent and readable names for array export suffix 2019-09-11 13:04:50 +02:00
Christopher Lackner
59087f5c2c make array name platform independent 2019-09-11 08:27:04 +02:00
Christopher Lackner
5288af641c array numpy buffer protocol 2019-09-10 23:01:05 +02:00
Matthias Hochsteger
66c4c3bf59 use global logging level without spdlog 2019-09-09 17:05:23 +02:00
Matthias Hochsteger
6c69df9fe6 Export TaskManager 2019-09-09 17:05:23 +02:00
Joachim Schöberl
5ffab34d13 fix rangecheck 2019-09-07 10:31:12 +02:00
Joachim Schöberl
be40a4d3f1 array setitem functionality 2019-09-06 17:17:11 +02:00
Joachim Schöberl
3e6f4b9472 use pointindex 2019-09-04 13:46:40 +02:00
Joachim Schöberl
71e8c6854c fix table creator 2019-08-30 08:28:08 +02:00
Matthias Hochsteger
6c06f79c8e Fix build error on Windows (wrong usage of Range()) 2019-08-29 19:22:12 -07:00
Matthias Hochsteger
78693fb196 Add Table and HashTable from NGSolve 2019-08-29 16:13:18 +02:00
Christopher Lackner
331c0b9486 fix AOWrapperIterator operator++ 2019-08-29 15:06:05 +02:00
Joachim Schöberl
fcea398d7c Merge branch 'subcomm' into 'master' 
sub-communicators as methods of NgMPI_Comm, using ngcore-arrays

See merge request jschoeberl/netgen!215
 2019-08-29 09:32:35 +00:00
Joachim Schöberl
7f8dd74a03 Merge branch 'bitarray_ngcore' into 'master' 
Bitarray from NGSolve to ngcore

See merge request jschoeberl/netgen!223
 2019-08-28 18:57:11 +00:00
Matthias Hochsteger
b27f7f3bb6 Add BitArray from NGSolve 
Deprecate method BitArray::Set(), instead use either SetBit() or
SetBitAtomic()
 2019-08-28 16:40:21 +02:00
Lukas
36a7c507b8 check in forgotten lines 2019-08-28 14:59:32 +02:00
Lukas
8444889cf3 add forgotten isend 2019-08-28 14:09:51 +02:00
Matthias Hochsteger
8acc8c9cb0 User /bigobj flag on Windows builds 2019-08-28 09:41:42 -07:00
Lukas
3f59727e15 Merge remote-tracking branch 'origin/master' into subcomm 2019-08-28 13:18:11 +02:00
Lukas
476a1e39b6 remove some whitespace 2019-08-27 16:52:54 +02:00
Lukas
a37c84e601 fix typo 2019-08-27 14:10:55 +02:00
Lukas
bca0f6a2ea Merge remote-tracking branch 'origin/master' into subcomm 2019-08-27 13:32:25 +02:00
Lukas
8d05fe0cec Merge remote-tracking branch 'origin/master' into array_sendrecv_to_netgen 2019-08-27 13:32:04 +02:00
Lukas
608381d774 include array header 2019-08-27 11:16:55 +02:00
Lukas
464f4223e7 fix typo 2019-08-27 11:14:02 +02:00
Joachim Schöberl
a9de67dd9b Merge branch 'array_pos' into 'master' 
get data-ptr from arrays

See merge request jschoeberl/netgen!211
 2019-08-26 12:13:44 +00:00
Lukas
c18b6cbbe1 sub-communicators as methods of NgMPI_Comm, using ngcore-arrays 2019-08-26 13:13:53 +02:00
Lukas
cb2c5d6323 move array-send and recv to ngcore 2019-08-26 13:02:13 +02:00
Lukas
209acb6af0 get data-ptr from arrays 2019-08-26 12:51:33 +02:00
Christopher Lackner
08f9c773b1 we need to implement both sized deallocation functions for older mac 
os targets
 2019-08-23 11:26:14 +00:00
Joachim Schöberl
0c31102638 Merge branch 'range_respect_indextype' into 'master' 
Range(obj) does respect index type now. If obj has a function Range it

See merge request jschoeberl/netgen!207
 2019-08-21 11:22:03 +00:00
Christopher Lackner
d61e9d10cd array returns index of appended element on Append, some documentation 2019-08-21 11:56:26 +02:00
Christopher Lackner
ceabe013be code style changes to signals 2019-08-21 11:31:25 +02:00
Christopher Lackner
b12ef20fb7 index type can only be deduced from class, else it is size_t 2019-08-21 11:24:37 +02:00
Christopher Lackner
22de6f2c56 fix typos 2019-08-21 11:06:00 +02:00