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241 Commits

Author SHA1 Message Date
Matthias Hochsteger
c5acbacadb Rename ArrayMem to NgArrayMem 2019-07-09 18:00:12 +02:00
Matthias Hochsteger
7f7b386388 Move array.hpp to ngarray.hpp 2019-07-09 11:20:44 +02:00
Matthias Hochsteger
2d46d21a52 Rename FlatArray to NgFlatArray 2019-07-09 10:40:35 +02:00
Matthias Hochsteger
cb87362f64 Rename Array to NgArray 2019-07-09 10:39:16 +02:00
Joachim Schöberl
2c14dd6350 lifetime of BlockAllocator, and mutex 2019-07-09 00:23:53 +02:00
Christopher Lackner
0a08450bfa move testout to ngcore 2019-05-28 13:51:53 +02:00
Lukas Kogler
5423242cd8 fix uninitialized values 2019-04-17 12:24:23 +02:00
Joachim Schöberl
734e96c87c get rid of ng_comm 2019-02-12 22:11:55 +01:00
Joachim Schöberl
83536e74e2 small change 2019-02-12 15:49:55 +01:00
Joachim Schöberl
aa9d5d76a7 small change 2019-02-12 15:47:05 +01:00
Joachim Schöberl
86683a4e60 small change 2019-02-12 15:46:24 +01:00
Joachim Schöberl
63d2f4bcd0 mpiwrapper 2019-02-11 22:53:32 +01:00
Joachim Schöberl
9b8f273b14 mpiwrapper 2019-02-11 22:12:29 +01:00
Joachim Schöberl
9ced2f561f mpi_wrapper 2019-02-11 21:37:28 +01:00
Joachim Schöberl
8a165ef8f1 subcomms 2019-02-08 20:24:54 +01:00
Christopher Lackner
d5f1076e17 read tet10, pyramid13, prism15 and hex20 from gmsh 2019-02-06 19:13:51 +01:00
Lukas
e880bff515 DLL_HEADER for ng_comm 2019-02-01 16:12:30 +01:00
Lukas
214b5c452d Wrap MPI-communicator on netgen side 2019-01-30 21:03:28 +01:00
Lukas
0f4ca1c7a7 Fewer ifdefs for MPI. More consistent use of mpi_interface instead of direct MPI calls. 2019-01-30 12:09:40 +01:00
Lukas
c7fb6c7e4a Add a global communicator. The mesh now has a communicator. 2019-01-29 16:10:02 +01:00
Matthias Hochsteger
4aa7e76bd1 MPI-Parallel output of profiler 2019-01-14 13:04:27 +01:00
Matthias Hochsteger
247b2a2892 [cmake] Replace object libraries with interface libraries 2019-01-08 13:12:24 +01:00
Matthias Hochsteger
5fa0cb850a Fix cmake error 2019-01-07 11:54:28 +01:00
Matthias Hochsteger
c6a401e066 Remove old profiler.hpp 2019-01-07 11:49:53 +01:00
Matthias Hochsteger
3a1cea6cbf [ngcore] Profiler 2019-01-03 15:54:50 +01:00
Christopher Lackner
f88cc77cfe move SymbolTable to ngcore 2019-01-02 18:21:52 +01:00
Christopher Lackner
fd3474f5cb logging in ngcore 2018-12-28 13:43:15 +01:00
Christopher Lackner
c5af003bba Merge remote-tracking branch 'gitlab/master' into ngcore 2018-12-13 13:19:40 +01:00
Christopher Lackner
83df85f274 detail namespace, linking ngcore to nglib 2018-12-12 11:05:17 +01:00
Christopher Lackner
3bb82dd2df DoArchive for array only if T is archivable, little cleanup 2018-12-07 11:20:47 +01:00
Matthias Hochsteger
63b7719c22 Update pybind11, remove evil hack 2018-12-03 11:38:11 +01:00
Christopher Lackner
7bfc48e8f3 start ngcore, archive in there 2018-11-29 18:35:30 +01:00
Matthias Hochsteger
8f16fdb159 [pybind] Update GIL hack for Python 3.7 2018-08-30 14:49:56 +02:00
Joachim Schöberl
6034f6ecc3 Merge branch 'visualization_data_geometries' into 'master' 
add functions to collect visualization data to python export of geometries

See merge request jschoeberl/netgen!92
 2018-07-12 17:21:02 +02:00
Christopher Lackner
c9cd9eea2c add functions to collect visualization data to python export of geometries 2018-07-12 16:35:52 +02:00
Matthias Hochsteger
ec3051815c [python] Patch pybind11 function to avoid deadlocks 
see https://github.com/pybind/pybind11/pull/1211
 2018-06-29 16:23:49 +02:00
Joachim Schöberl
7e8f8dbeb0 GetPeriodicVertices in new interface 2018-06-08 16:28:51 +02:00
Joachim Schöberl
5a320121fd move DoArchive to cpp-file 2018-04-28 12:07:57 +02:00
Joachim Schöberl
8522cfdac5 fix for msvc ???? 2018-04-28 11:53:24 +02:00
Joachim Schöberl
0b0616eee8 bug fix table archive 2018-04-28 10:34:46 +02:00
Joachim Schöberl
bda771f86f more archive 2018-04-28 03:42:04 +02:00
Joachim Schöberl
f85b51496f persistent archiving of pointers 2018-04-27 22:34:25 +02:00
Joachim Schöberl
633376972f archiving the mesh 2018-04-27 08:36:22 +02:00
Joachim Schöberl
b151c9d7da int to MyStr 2018-03-15 19:19:48 +01:00
Joachim Schöberl
edf7861ee3 size_t for Array size 2018-03-15 19:01:32 +01:00
Joachim Schöberl
73a5381d2e virtual dtro in Archive 2018-03-15 19:01:32 +01:00
Joachim Schoeberl
98dab9ca7c fix mpi send 2018-03-14 11:42:22 +01:00
Matthias Hochsteger
162b422e48 Better distribution for hash values in ClosedHashTable 2018-02-20 12:35:22 +01:00
luz.paz
58002505bc Typos 
Found via `codespell`
 2018-01-14 12:18:54 -05:00
Joachim Schöberl
d75f4e79ce 64bit issue in Table allocation 2018-01-12 15:55:29 +01:00
Joachim Schöberl
dca5a01e04 more parallel in topology 2018-01-04 13:00:01 +01:00
Joachim Schöberl
5469356147 tracer in Netgen 2018-01-04 10:43:34 +01:00
Unknown
afdc1ae85a Misc. typos 
More typo
 2017-12-09 22:21:40 -05:00
Joachim Schöberl
17c35f0640 fix simd<double,2> 2017-11-27 10:26:38 +01:00
Joachim Schöberl
25ba2f7a54 SSE - vectorization 2017-11-27 10:20:18 +01:00
Joachim Schöberl
3665e649d7 remove experimental timers, no TSC per default 2017-11-24 09:23:14 +01:00
Joachim Schöberl
7cf05d84a8 AVX512 for element-trafos 2017-11-23 21:26:36 +01:00
Joachim Schöberl
ff3c1a2c36 new closed hashtable with automatic increase 2017-11-13 11:58:13 +01:00
Joachim Schöberl
5dc501af26 optional use of tsc-counter 2017-11-13 11:58:13 +01:00
Matthias Hochsteger
8f11b84911 Fix for MSVC 2017-10-17 11:02:39 +02:00
Matthias Hochsteger
949ead991f Update ngsimd.hpp 2017-10-17 10:32:59 +02:00
Matthias Hochsteger
1430b89e39 Update pybind11 to version 2.2.0 
- Replace PYBIND11_PLUGIN with PYBIND11_MODULE

- Fix warnings about symbol visibility by replacing
  'namespace pybind11' with 'namespace PYBIND11_NAMESPACE'

- Pybind sets the default visibility of its namespace to 'hidden'
  Thus, our export functions like  ExportCSG(py::module &m) also are
  hidden by default. To work around that define DLL_HEADER
  '__attribute__ ((visibility ("default")))
  on GNUC platforms.
 2017-09-01 10:16:56 +02:00
Matthias Hochsteger
d4a2d4c87b Check if mesh file exists before loading 
Also derive NgException from std::exception to print the error message
in Python / on the command line.
 2017-08-24 13:59:16 +02:00
Lukas Kogler
6524c0c170 Merged master 2017-06-06 10:11:41 +02:00
Matthias Hochsteger
f6a0b31b96 Cleanup CMake build system 
- Use CMAKE_INSTALL_PREFIX instead of INSTALL_DIR
  - Allow finer control of install directories
  - Use compiled TCL code by default
  - Fix RPATH usage on Linux and MacOSX

### Allow finer control of install directories
The following variables can be set to either absolute or relative paths
NG_INSTALL_DIR_PYTHON: Python files
NG_INSTALL_DIR_BIN: Executables
NG_INSTALL_DIR_LIB: Libraries
NG_INSTALL_DIR_INCLUDE: header files
NG_INSTALL_DIR_CMAKE: CMake files
NG_INSTALL_DIR_RES: Resources

### Use compiled TCL code by default
The tcl files contained in Netgen are stored in onetcl.cpp as c-string.
This way it's not necessary to install tcl files or set NETGENDIR

### Fix RPATH usage on Linux and MacOSX
The Netgen installation should be completely relocatable now.

Squashed commit of the following:

commit 201eda5e62726bd87d76beb13c3e5643cd4c7810
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 21:10:08 2017 +0200

    cleanup

commit b4cd46a9d2f390b40c5223c8d9971f576b979644
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:47:46 2017 +0200

    fix

commit 6506a834dbee2fd7b6df3b3f3709d0b27344356f
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:41:45 2017 +0200

    allow gui test to fail

commit 56c5fc131f61259e6fb67b60f7fff955d2e8d2da
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 20:26:18 2017 +0200

    add python3-tk to docker images

commit 4d1b5aac1d028867339819599708a08f2098bbd6
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:22:18 2017 -0700

    windows fix

commit 92b5f8a95491ba3508143d7f1b94359edc0655ce
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:08:08 2017 -0700

    fix for windows

commit 3f7bf51434ef3b637b3563930ddb61d04af645cb
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 19:28:13 2017 +0200

    fixes, test for gui

commit ef1d0164a50fadf374e3b1e43a745b5f69a16ad6
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 19:06:55 2017 +0200

    fixes

commit 67645bb896012149c23c851b03287199c21fa129
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 17:24:58 2017 +0200

    netgen config

commit b587b77a282768719cffc366c56d82a1746e0be0
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 16:53:47 2017 +0200

    remove comments

commit 2b34cc78818afa1cf21484bd0976413a91db0851
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 05:03:00 2017 -0700

    fix windows

commit 9e98efa54065624e264eaf1acf74b44ef022a68d
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 13:42:11 2017 +0200

    fixes

commit 394b470a07d73431079f80caa36c7c7042077f40
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 12:24:40 2017 +0200

    fix rpath issue

commit 6787eae384a8592f90598258ccd8207cd499d9fc
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 11:37:05 2017 +0200

    some more fixes with install dir

commit fcf22659c60300e8d39d12e14b21c58a062e739c
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 01:34:06 2017 -0700

    some fixes

commit ede1f0c462978bb70d3b4e2251cb555a592e82e3
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 29 10:16:34 2017 +0200

    fixes

commit b6a1259876a77f54e419a44f1b44d03d5bb49b82
Merge: c79f9a3 6627b0b
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Wed May 24 09:35:50 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit c79f9a3421d4d2937c31dab4a601ce09d52b0e54
Merge: 99c3550 030ad1d
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Mon May 22 17:52:24 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit 99c35500850e08fdc847013bb384169b1483acb4
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 19 14:37:28 2017 +0200

    fix rpath

commit 8215e9748d9ee225266bc941da1ca252aebd27de
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu May 18 13:29:41 2017 +0200

    remove INSTALL_DIR, rename var to NETGEN_INSTALL_DIR_INCLUDE, install libngpy to python package folder

commit 23d028c4cf7572de9e2e277cda8f6b07b6b1d9f9
Merge: 57027c8 f72a247
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Thu May 18 12:03:59 2017 +0200

    Merge remote-tracking branch 'origin/master' into cmake_cleanup

commit 57027c8c706ff755bdf26887884bbdeca129fe8f
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 12 17:32:05 2017 +0200

    New CMake option: USE_INTERNAL_TCL (ON by default)

    This option uses the tcl code compiled in onetcl.cpp instead of separate
    tcl files by default. When set at configure time, no tcl files will be
    installed anymore.

commit 27ce5b7edd66d64e2453f5045f5ac08c313f7608
Author: Matthias Hochsteger <matthias.hochsteger@tuwien.ac.at>
Date:   Fri May 12 17:16:52 2017 +0200

    WIP: Cleanup of CMake files

      - Fix RPATH on Linux (TODO: other platforms)
      - New variables to specify install behaviour:
          NG_INSTALL_DIR_BIN
          NG_INSTALL_DIR_LIB
          NG_INSTALL_DIR_CMAKE
          NG_INSTALL_DIR_INCLUDE
 2017-05-29 21:41:27 +02:00
Joachim Schöberl
7c8631cf2e Merge branch 'move_in_delete_element_array' into 'master' 
use std::move in delete element of array

See merge request !46
 2017-05-11 10:55:55 +02:00
Christopher Lackner
b87e76306f use std::move in delete element of array 2017-05-11 10:25:29 +02:00
Matthias Hochsteger
247afdb1bd Define NG_INLINE and use it in ngsimd.hpp (works around a bug in gcc5) 2017-04-20 16:22:50 +02:00
Matthias Hochsteger
9247c89fd7 add missing function HSum(a,b) for SIMD<double,1> 2017-04-20 11:41:23 +02:00
Matthias Hochsteger
643c89538d Add support for AVX512 
Restructure mysimd.hpp and add support for AVX512. Changes include

  - Move mysimd.hpp to ngsimd.hpp
  - Expose ngsimd.hpp to NGSolve
  - New namespace ngsimd
  - Second template parameter (width) for SIMD class, default to the
    largest width available
  - Avoid raw avx register types in the interface, use SIMD<> instead
 2017-04-19 18:02:27 +02:00
Joachim Schöberl
4382fc1168 fix hashtable 2017-04-11 10:04:33 +02:00
Joachim Schöberl
e6b853e995 hashtables roundup to power of 2, optimize bisect 2017-04-11 09:01:36 +02:00
Lukas Kogler
d24b996c8f Merge branch 'master' into par_fixes 2017-03-22 14:03:11 +01:00
Matthias Hochsteger
079406f615 Include <functional> (gcc7 was complaining here) 2017-03-17 21:09:27 +01:00
lkogler
383ced496b Changed MyMPI_RecvCmd and MyMPI_SendCmd. Disabled USE_BUFFERS for now. 2017-03-06 14:32:20 +01:00
Joachim Schöberl
90d4c94028 make Topology a member of Mesh (rather then pointer) to reduce number of pointer dereferencing steps. This required move operators for Array and Table. 2017-02-25 19:48:37 +01:00
Joachim Schöberl
c143aafaea Array resize checks for trivially copyable 2017-02-24 22:29:57 +01:00
Matthias
f674d5a20a Assume that malloc returns memory that is 16 byte-aligned 
This fixes an issue with inconsistent memory allocation/deallocation of
MeshPoint in Python.
 2017-02-07 10:26:31 +01:00
Matthias Hochsteger
4cff6b546a install all headers to INCDIR 2017-01-16 14:59:57 +01:00
Joachim Schöberl
59dc0b6c6a Array::Append does not return size anymore ( will be changed to last ) 2016-12-11 18:22:07 +01:00
Matthias Hochsteger
ee4d5e89d8 remove unnecessary files (mostly unsupported build systems) 2016-11-23 18:07:14 +01:00
Christopher Lackner
0a9abc1acc array iterator to python 2016-11-15 18:12:51 +01:00
Matthias Hochsteger
5b253c76e0 Add a guard to avoid multiply defined AVX operators on Windows 2016-11-10 15:36:47 +01:00
Lukas Kogler
37e0e17919 removed some comments. formatting 2016-11-08 12:57:59 +01:00
Lukas Kogler
49aa2861d6 changed buffer size in send/recv cmd (for sending entire python files) 2016-11-07 17:48:23 +01:00
Matthias Hochsteger
399d370463 fix some typos and add placement new operator to AlignedAlloc 2016-11-04 12:48:23 +01:00
Matthias Hochsteger
96c1235184 switch from boost::python to pybind11 2016-11-04 12:14:52 +01:00
Joachim Schöberl
3fcb7d13d5 dummy aligned-alloc without AVX 2016-10-30 15:15:16 +01:00
Joachim Schöberl
3a631f10ca solution visualization using AVX 2016-10-30 15:01:52 +01:00
Joachim Schöberl
cdcd868712 size_t 2016-10-25 23:34:06 +02:00
Joachim Schöberl
e009a8b687 started task-manager in netgen (topology) 2016-08-18 00:49:47 +02:00
Joachim Schöberl
5448157842 use SIMD also for AVX (not only AVX2) 2016-08-07 19:13:36 +02:00
Alexander Schlüter
d282a5914d fix compiler errors in mpi build 2016-07-15 15:26:25 +02:00
Joachim Schöberl
0a9adc91e9 default simd ctr 2016-07-07 19:54:47 +02:00
Joachim Schöberl
59bc017c40 bring std-operators to namespace 2016-07-07 19:49:02 +02:00
Joachim Schöberl
8414cb2d60 using simds for element-trafo, added type-template to many classes 2016-07-06 17:12:57 +01:00
Joachim Schoeberl
ee6fbe65e7 parallel refinement 2016-02-28 06:05:19 +01:00
Joachim Schöberl
1ac9c02f5b lexicographic ordering for uni-form mesh refinement 2016-02-26 20:29:14 +01:00
Matthias
8a3e29e624 get rid of pthread 2016-02-23 20:23:48 +01:00
Matthias Hochsteger
402e85cc17 bugfix due to capturing of thread index by reference 2016-02-23 11:08:20 +01:00